GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-20 14:07:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Zootoca vivipara genome assembly, chromosome: 2.
OY735903.1:13215978-13215997
TGATGGCTGGTTAAATATTAATTTGTCATA13215978TGGTAGGCTCGTGAATTTGCCATATGGTAGGCTAAAAAATTATGGTGCTG
BOGHI84TR BOGH Brassica oleracea genomic clone BOGHI84, genomic survey sequence.
BH464985.1:171-190
ACTTGTTTGGCTTACGCATATTGATATCTT171TGGTAGGCTCGTGAATTTGCTTATGACATTTTTAGACGATTTCTTGTGCC
BOGZL95TR BOGZ Brassica oleracea genomic clone BOGZL95, genomic survey sequence.
BH527972.1:7-26
GAAGTT7TGGTAGGCTCGTGAATTTGCTTATGAAATTTATAGTCGATTGCTTATGCT
KBrH121J01 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT013448.1:790-809
TCTTGTTTGGCTTACGCATGTTGGTATGTT790TGGTAGGCTCGTGAATTTGCTTATGACATTTCTAGTCGATTTCTTGTGCT
BOT01-42G23TF BOT01 Brassica oleracea genomic clone BOT01-42G23, genomic survey sequence.
FI706896.1:80-99
TCTTGTTTGGCTTACGCATGTTGATATTTT80TGGTAGGCTCGTGAATTTGCTAATGATTTTGTTAGTCTCTTGCTTGTGCT
BOT01-42G23TF BOT01 Brassica oleracea genomic clone BOT01-42G23, genomic survey sequence.
FI706896.1:273-292
TTCTTGTTTGGCTTCCCATGTTGATATCTT273TGGTAGGCTCGTGAATTTGCTAATGACATTGTTAGTTTCTTGCTTGTGCT
BOT01-42G24TF BOT01 Brassica oleracea genomic clone BOT01-42G24, genomic survey sequence.
FI707330.1:45-64
TCTTGTTTGGCTTACGCATGTTGATATTTT45TGGTAGGCTCGTGAATTTGCTAATGATTTTGTTAGTCTCTTGCTTGTGCT
BOT01-42G24TF BOT01 Brassica oleracea genomic clone BOT01-42G24, genomic survey sequence.
FI707330.1:238-257
TTCTTGTTTGGCTTCCCATGTTGATATCTT238TGGTAGGCTCGTGAATTTGCTAATGACATTGTTAGTTTCTTGCTTGTGCT
BOT01-58A19TF BOT01 Brassica oleracea genomic clone BOT01-58A19, genomic survey sequence.
FI717387.1:682-701
GCTTACGCATGTTGATATTGCAGATATCTT682TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
BOT01-60K12TF BOT01 Brassica oleracea genomic clone BOT01-60K12, genomic survey sequence.
FI724674.1:789-808
ACGCATGTTGATATCGCATGTTGATATCTT789TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTTTTGTTGCTTAT
BOT01-86H18TR BOT01 Brassica oleracea genomic clone BOT01-86H18, genomic survey sequence.
FI738337.1:642-661
GCTTACGCATGTTGATATTGCAGATATCTT642TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
BOT01-105J12TF BOT01 Brassica oleracea genomic clone BOT01-105J12, genomic survey sequence.
FI753509.1:710-729
TCTTGTTCTGCTTATGCATGTTGATATTGT710TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGTTGCTTGT
BOT01-113N4TF BOT01 Brassica oleracea genomic clone BOT01-113N4, genomic survey sequence.
FI760437.1:40-59
TCTTGTTTGGCTTACGGATGTTGATATGTT40TGGTAGGCTCGTGAATTTGCTTATGAAATTTATAGTCGATTGCTTATGCT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:1719934-1719953
GTTGTTTTGGCTTACGCATATTGATATCTT1719934TGGTAGGCTCGTGAATTTGCTTATGACATTTCCAGCTGATTGCTTGTGCT
Brassica napus clone JBnB009P12, complete sequence.
AC236784.1:25720-25739
TCTTGTTTGACTAACGCATGTTGATATGTT25720TGGTAGGCTCGTGAATTTGCTTAGGACATTGTTAATCTCTTTCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:6327711-6327730
ACGCATGTTGATATTGCATGTTGATATCTT6327711TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGTTGCTTGT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:6328281-6328300
TCTTGTTCGGCTTATGCATGTTGATATCTT6328281TGGTAGGCTCGTGAATTTGCATGAGACTGTGTAGAGTTTTTAAAATTTCA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:53191146-53191165
ACTTGTTTGGCTTACGCATGTTGATATCTT53191146TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCGTGTGCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:53191532-53191551
TATTGTTTGGTTTACGCATGTTGATATCTT53191532TGGTAGGCTCGTGAATTTGCTGATGACATTGTTAGTCTCTTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:53191723-53191742
TATTGTTTGGTTTACGCATCTTGATATCTT53191723TGGTAGGCTCGTGAATTTGCTTATGATATTGTTAGTCTCTTACTTGTGCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:53192687-53192706
TATTGTTTGGTTTACGCATCTTGATATCTT53192687TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:60718666-60718685
ACTTGTTTGGCTTACGCATATTGATATCTT60718666TGGTAGGCTCGTGAATTTGCTTATAACATTTCTAGATGATTTCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:16206515-16206534
TCTTGTTCTGCTTACGCATGTAGATATTTT16206515TGGTAGGCTCGTGAATTTGCTTATGACATTGTAAGTCTCTTGTTGCTTGT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:20495853-20495872
TTTTGTTTTGCTTACGCATGTTGATATGTT20495853TGGTAGGCTCGTGAATTTGCTTATGACATTTCTAGTCGATTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:42480583-42480602
TCTTGTTCGGCTTATGCATGTTGATATCTT42480583TGGTAGGCTCGTGAATTTGCATGAGACTGTGTAGAGTTTTTAAAATTTCA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:46112487-46112506
ACTTGTTTGGATTACGCATATTGATATCTT46112487TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAATCGCTTGCTTGTGGT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:3094255-3094274
AGTTGTTTGGCTTACGCATATTGATATCTT3094255TGGTAGGCTCGTGAATTTGCTTATGACATTTCCAGCTGATTGATTGTGCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19426843-19426862
TCTTGTTTGGCTTACGCATGTTGATATTTT19426843TGGTAGGCTCGTGAATTTGCTAATGATTTTGTTAGTCTCTTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:19427036-19427055
TTCTTGTTTGGCTTCCCATGTTGATATCTT19427036TGGTAGGCTCGTGAATTTGCTAATGACATTGTTAGTTTCTTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:45272063-45272082
TCTTCTTCTGCTTACGCATGTTGATATCTT45272063TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:19010056-19010075
TTTTGTTTGGCTTACGCATGTTGATATCTT19010056TGGTAGGCTCGTGAATTTGCTAATGACATTGTTAGTTTCTTGCTTGTGCT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:19010259-19010278
TCTTGTTTGGCTTACGCATGTTGATATCTC19010259TGGTAGGCTCGTGAATTTGCTAATGACATTGTTAGTCTCTTGCTTTTGCT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:2983063-2983082
AGTTGTTTGGCTTACGCATATTGATATCTT2983063TGGTAGGCTCGTGAATTTGCTTATGACATTTCCAGCTGATTGATTGTGCT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:14634145-14634164
TCTTGTTTGGCTTACGGATGTTGATATGTT14634145TGGTAGGCTCGTGAATTTGCTTATGAAATTTTTAGTCGATTGCTTGTGCT
Brassica napus genome assembly, chromosome: C01.
HG994365.1:25089655-25089674
TTTTGTTTGACTAACACATGTTGATATGTT25089655TGGTAGGCTCGTGAATTTGCTAAGGACATTGTTAGTCTCTTTCTTGTGCT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:13694147-13694166
ACTTGTTTGGCTTACGCATGTTGATATCTT13694147TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCGTGTGCT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:13694540-13694559
CTTATTATTAGGTGTGCATGTTGATATCTT13694540TGGTAGGCTCGTGAATTTGCCTATGATATTGTTAGTCTCTTGCTTGTGCT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:57566984-57567003
TCTTGTTCGTCTTATGCATGTTGATATCTT57566984TGGTAGGCTCGTGAATTTGCATGAGACTGTGTATAGTTTTTAAAATTTCA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:34742308-34742327
ACGCATGTTGATATCGCATGTTGATATCTT34742308TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTTTTGTTGCTTAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:34742500-34742519
TCTTGTTCTGTGTATGCATGTTGATATCTT34742500TGGTAGGCTCGTGAATTTGCTAATTACATTGTTAGTTTCTTGTTGCTTGT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:37061382-37061401
GCTTACGCATGTTGATATTGCAGATATCTT37061382TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:37061952-37061971
TCTTGTTCGGCTTATGCATGTTGATATCTT37061952TGGTAGGCTCGTGAATTTGCATGAGACTGTAGAGTTTTTAAAATTTCATG
Brassica napus genome assembly, chromosome: C05.
HG994369.1:41972574-41972593
ACTTGTTTGGCTTACGCATGTTGATATGTT41972574TGGTAGGCTCGTGAATTTGCTTATTCTTGTGAAACTGTGTAGTTTTTTAA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:41972736-41972755
TCTTGTTTATCTTACACATGTTGGTATATT41972736TGGTAGGCTCGTGAATTTGCTTATGACATTTATCGTCTCTTGCTTGCGCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:26962782-26962801
ACTTGTTTGGCTTACGCATGTTGATATGTT26962782TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCTTGTTCT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:38265880-38265899
GCTTACGCATGTTGATGTTGCAGATATCTT38265880TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:38266451-38266470
TCTTGTTCGGCTTATGCATGTTGATATCTT38266451TGGTAGGCTCGTGAATTTGCATGAGACTGTAGAGTTTTTAAAATTTCATG
Brassica rapa genome, scaffold: A04.
LR031576.1:3004568-3004587
AGTTGTTTGGCTTACGCATATTGATATCTT3004568TGGTAGGCTCGTGAATTTGCTTATGACATTTCCAGCTGATTGATTGTGCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:34979864-34979883
ACGCATGTTGATATCGCATGTTGATATCTT34979864TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTTTTGTTGCTTAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:34980056-34980075
TCTTGTTCTGTGTATGCATGTTGATATCTT34980056TGGTAGGCTCGTGAATTTGCTAATTACATTGTTAGTTTCTTGTTGCTTGT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:37331253-37331272
GCTTACGCATGTTGATATTGCAGATATCTT37331253TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:37331823-37331842
TCTTGTTCGGCTTATGCATGTTGATATCTT37331823TGGTAGGCTCGTGAATTTGCATGAGACTGTAGAGTTTTTAAAATTTCATG
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:15383807-15383826
ACTTGTTTGGCTTACGCATGTTGATATCTT15383807TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCGTGTGCT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:15384200-15384219
CTTATTATTAGGTGTGCATGTTGATATCTT15384200TGGTAGGCTCGTGAATTTGCCTATGATATTGTTAGTCTCTTGCTTGTGCT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:37428903-37428922
GCTTACGCATGTTGATGTTGCAGATATCTT37428903TGGTAGGCTCGTGAATTTGCTTATGAAATTGTTAGTCTCTTGTTGCTTGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:37429474-37429493
TCTTGTTCGGCTTATGCATGTTGATATCTT37429474TGGTAGGCTCGTGAATTTGCATGAGACTGTAGAGTTTTTAAAATTTCATG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:40062281-40062300
ACTTGTTTGGCTTACGCATGTTGATATGTT40062281TGGTAGGCTCGTGAATTTGCTTATTCTTGTGAAACTGTGTAGTTTTTTAA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:40062443-40062462
TCTTGTTTATCTTACACATGTTGGTATATT40062443TGGTAGGCTCGTGAATTTGCTTATGACATTTATCGTCTCTTGCTTGCGCT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:14595175-14595194
TCTTGTTTGGCTTACGGATGTTGATATGTT14595175TGGTAGGCTCGTGAATTTGCTTATGAAATTTATAGTCGATTGCTTATGCT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:36126294-36126313
ACTTGTTTGGCTTACGCATGTTGATATGTT36126294TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCTTGTTCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:8373237-8373256
ACTTGTTTGGCTTACGTATGTTAATATCTT8373237TGGTAGGCTCGTGAATTTGCTTATGATATGATTAGTCTCTTGCTTGTGAT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:16234769-16234788
ACTTGTTTGGCTTACGTATGTTAATATCTT16234769TGGTAGGCTCGTGAATTTGCTTATGATATGATTAGTCTCTTGCTTGTGAT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:3027343-3027362
AGTTGTTTGGCTTACGCATATTGATATCTT3027343TGGTAGGCTCGTGAATTTGCTTATGACATTTCCAGCTGATTGATTGTGCT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:8261090-8261109
TAAAAAATGAAATGAAAAATATATTATTTT8261090TGGTAGGCTCGTGAATTTGCTTATGACATTGTTAGTCTCTTGCTTGTGCT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:8373237-8373256
ACTTGTTTGGCTTACGTATGTTAATATCTT8373237TGGTAGGCTCGTGAATTTGCTTATGATATGATTAGTCTCTTGCTTGTGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGGTAGGCTCGTGAATTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTAGGCTCGTGAATTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.542 | 0.533 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTAGGCTCGTGAATTTGC&k=0&no_gap=0&offset=0&limit=50
0.610 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAATTCACGAGCCTACCA&k=0&no_gap=0&offset=0&limit=0
0.610 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).