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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 02:22:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1CP52TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890150.1:425-446
AGCCACAGAGAAGCAAGACGAGTCCACATC425TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTTGGAGGACCCTCAGGTCCTG
RS2FZ96TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572242.1:479-500
GCCACAGAGAAGCAAGATGGAGTTCACATC479TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTCGGACCCTCAGGTCCTGTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33634.
FX792765.1:375-396
GCCACAGAGAAGCAAGACGGAGTCCACATC375TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTTGGAGGACCCTCAGGTCCTG
RS1CP52JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893721.1:587-608
CAGGACCTGAGGGTCCTCCAACAGAGAGGA587TGAGGACCACTGTCTTTTCGAAGATGTGGACTCGTCTTGCTTCTCTGTGGCT
RS2FZ96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575921.1:584-605
CTACAGGACCTGAGGGTCCGACAGAGAGGA584TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13637.
FX663908.1:554-575
CAGGACCTGAGGGTCCTCCAACAGAGAGGA554TGAGGACCACTGTCTTTTCGAAGATGTGGACTCCGTCTTGCTTCTCTGTGGC
TSA: Raphanus sativus RS27218 mRNA sequence.
JT811765.1:330-351
CAGGACCTGAGGGTCCTCCAACAGAGAGGA330TGAGGACCACTGTCTTTTCGAAGATGTGGACTCCGTCTTGCTTCTCTGTGGC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:14371256-14371277
CTACAGGACCTGAGGGTCCAACAGAGAGGA14371256TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:14371256-14371277
CTACAGGACCTGAGGGTCCAACAGAGAGGA14371256TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTCGAAAAGACAGTGGTCCTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGAAAAGACAGTGGTCCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.221 | 0.212 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGAAAAGACAGTGGTCCTCA&k=0&no_gap=0&offset=0&limit=50
0.438 | 0.217 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGGACCACTGTCTTTTCGAA&k=0&no_gap=0&offset=0&limit=47
0.442 | 0.004 | cgi_end;

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