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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 22:37:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Camellia sinensis mRNA, clone: RT7G11, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951913.1:20-39
CTCACACTCACAAGCCTTT20TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGGAGCTCAATCTA
EST1067 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_08_58.M13+_B08.ab1, mRNA sequence.
GE650740.1:32-51
ATCGGCCATTACGGCCGGGGACAAGCCTTT32TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGAGAGGAGCTCAA
EST2180 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_23_29.M13+_E04.ab1, mRNA sequence.
GE651853.1:36-55
GCCATTACGGCCGGGGACTCACAAGCCTTT36TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGAGGAGCTCAATC
EST2376 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_06.M13+_F01.ab1, mRNA sequence.
GE652049.1:30-49
TATCGGCCATTACGGCCGGGGAAGCCTTT30TTGTCAGAAACGGTGACTCCGGAGAGAGAGAGAGAGAGGAGCTCAATCTA
Agrostemma githago genome assembly, chromosome: 10.
OY288248.1:73829683-73829702
GAAAAGTCAAACCTCCGTGTTCCACAGGGA73829683GGAGTCACCGTTTCTGACAAGCTCTTCTCTGAATTCTGCTGTTGTGGGTC
Agrostemma githago genome assembly, chromosome: 19.
OY288257.1:64140720-64140739
GAAAAGTCAAACCTCCGTGTTCCACAGGGA64140720GGAGTCACCGTTTCTGACAAGCTCTTCTCTGAATTCTGGCGTTGTGGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTGTCAGAAACGGTGACTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTCAGAAACGGTGACTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.397 | 0.389 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTCAGAAACGGTGACTCC&k=0&no_gap=0&offset=0&limit=50
0.423 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGTCACCGTTTCTGACAA&k=0&no_gap=0&offset=0&limit=46
0.424 | 0.002 | cgi_end;

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