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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-17 16:24:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1AD26JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW719699.1:493-514
GTTACCTCAATCTGGTTCCTGTGATCTCCC493TTTATTTCCACAGCCGACACACCTTTAAACTTAACCGCAGTTTTCATTGCTT
RS2BD62JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730543.1:556-577
GTTACCTCAATCTGGTTCCTGTGATCTCCC556TTTATTTCCACAGCCGACACACCTTTAAACTTAACCGCAGTTTTCATTGCTT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:2985864-2985885
GTTACCTCGATCTGGTTCCTGTGATCTCCC2985864TTTATTTCCACAGCCGACACACCTATAAGACATTACATTTAACTCTTTTAGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1763798-1763819
GTTACCTCAATCTGGTTCCTGTGATCTCCC1763798TTTATTTCCACAGCCGACACACCTATAAAACCATTGCATTAACTATTTAGAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1763798-1763819
GTTACCTCAATCTGGTTCCTGTGATCTCCC1763798TTTATTTCCACAGCCGACACACCTATAAAACCATTGCATTAACTATTTAGAT
RS1AD26TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715054.1:193-214
AAGCAATGAAAACTGCGGTTAAGTTTAAAG193GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATTGAGGTAAC
RS2BD62TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW726371.1:119-140
AAGCAATGAAAACTGCGGTTAAGTTTAAAG119GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATTGAGGTAAC
Brassica napus GSS, clone JBnB045D17, end read, primer SACR2(reverse).
FP020184.1:421-442
TCTAAAAGAGTTAAATGTAATGTCTTATAG421GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:44080214-44080235
ATCTAAAGAGTTAAATGTAATGTCTTATAG44080214GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:29593393-29593414
TCTAAAAGAGTTAAATGTAATGTCTTATAG29593393GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:48891019-48891040
TCTAAAAGAGTTAAATGTAATGTCTTATAG48891019GTGTGTCGGCTGTGGAAATAAAGGGAGATCACAGGAACCAGATCGAGGTAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TTTATTTCCACAGCCGACACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TTTATTTCCACAGCCGACACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.304 | 0.295 | search_plus_done; http://172.18.8.135:50400/match?q=TTTATTTCCACAGCCGACACAC&k=0&no_gap=0&offset=0&limit=50
0.680 | 0.376 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTGTCGGCTGTGGAAATAAA&k=0&no_gap=0&offset=0&limit=45
0.684 | 0.004 | cgi_end;

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