GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-16 05:59:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-005K01, 3' end sequence.
DK517340.1:410-427
CCAATAAACTGCGGGAAGAGTATGACTTAA410CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-017P17, 3' end sequence.
DK522035.1:371-388
CCAATAAACTGCGGGAAGAGTATGACTTAA371CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-018G07, 3' end sequence.
DK522193.1:401-418
CCAATAAACTGCGGGAAGAGTATGACTTAA401CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-039H24, 3' end sequence.
DK530264.1:355-372
CCAATAAACTGCGTGAAGAGCTTGACCTAA355CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica oleracea var. viridis mRNA, clone: KALE-043M20, 3' end sequence.
DK531901.1:388-405
CCAATAAACTGCGGGAAGAGTATGACTTAA388CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-072I01, 3' end sequence.
DK542863.1:396-413
CCAATAAACTGCGTGAAGAGCTTGACCTAA396CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica oleracea var. viridis mRNA, clone: KALE-084D13, 3' end sequence.
DK547339.1:414-431
CCAATAAACTGCGGGAAGAGTATGACTTAA414CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica oleracea var. viridis mRNA, clone: KALE-138O22, 3' end sequence.
DK568239.1:359-376
CCAATAAACTGCGGGAAGAGTATGACTTAA359CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
47RDOAH_UP_047_C01_19AUG2004_011 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
DY029929.1:572-589
CCAATAAACTGCGTGAAGAGCTTGACCTAA572CCGAATCTGACTTGGACACAAT
EX2PLCL3_UP_041_D01_02NOV2004_009 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE504229.1:267-284
CCAATAAACTGCGGGAAGAGTATGACTTAA267CCGAATCTGACTTGGACACAATAAGGTTTCTTATTGACGTGTTTCGCC
EX2PLCL3_UP_042_A05_02NOV2004_047 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE504267.1:267-284
CCAATAAACTGCGGGAAGAGTATGACTTAA267CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
OL6004R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6004, mRNA sequence.
EH423429.1:52-69
CCAATAAACTGCGTGAAGAGCTTGACCTAA52CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
BNAEN3GH_UP_134_B11_1ONOV2006_093 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV003620.1:283-300
CCAATAAACTGCGGGAAGAGTATGACTTAA283CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
BNSCS5CT_UP_136_B09_30MAY2007_077 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV087615.1:206-223
CCAATAAACTGCGGGAAGAGTATGACTTAA206CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
0189508 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092341.1:368-385
CCAATAAACTGCCTGAAGAGCTTGACCTAA368CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
0189509 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092342.1:368-385
CCAATAAACTGCCTGAAGAGCTTGACCTAA368CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
0099165 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV198012.1:654-671
CCAATAAACTGCGGGAAGAGTATGACTTAA654CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
BR114898 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-09F10 5', mRNA sequence.
EX131068.1:711-728
CCAAAAAGCTGCGTGAAGAGTATGACTTAG711CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
BN18DYSC_UP_172_B10_4APR2008_078 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG567617.1:448-465
CCAATAAACTGCGGGAAGAGTATGACTTAA448CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
BNAOV1GH_T3_003_F06_12JULY2007_038 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR439900.1:654-671
CCAAAAAGCTGCGTGAAGAGTATGACTTAG654CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
BOGQG67TR BOGQ Brassica oleracea genomic clone BOGQG67, genomic survey sequence.
BH463883.1:209-226
CCAATAAACTGCGGGAAGAGTATGACTTAA209CCGAATCTGACTTGGACACAGTGAGGTTTCTTATTGACGTGTTTCGCC
Brassica napus GSS, clone JBnB062I04, end read, primer SACR2(reverse).
CU950498.1:181-198
CCAATAAACTGCGTGAAGAGCTTGACCTAA181CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
BOT01-112O12TR BOT01 Brassica oleracea genomic clone BOT01-112O12, genomic survey sequence.
FI761377.1:635-652
CCAATAAACTGCGTGAAGAGCTTGACCTAA635CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043F18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189351.2:39771-39788
CCAATAAACTGCGTGAAGAGCTTGACCTAA39771CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2180930-2180947
CCAATAAACTGCGTGAAGAGCTTGACCTAA2180930CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
AC232437.1:3236-3253
CCAATAAACTGCGTGAAGAGCTTGACCTAA3236CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:868678-868695
CCAATAAACTGCGTGAAGAGCTTGACCTAA868678CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACTTGTTTCACT
Camelina sativa cultivar CO46 chromosome 3.
CP131552.1:1429854-1429871
CTAACAAACTCTGTGAAGAGTTTGACCTAA1429854CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Camelina sativa cultivar Joelle chromosome 3.
CP145267.1:2068827-2068844
CTAACAAACTCTGTGAAGAGTTTGACCTAA2068827CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Camelina sativa cultivar CO46 chromosome 3.
CP146038.1:1464850-1464867
CTAACAAACTCTGTGAAGAGTTTGACCTAA1464850CCGAATCTGACTTGGACACATTGAGATTTCTTATCGACGTGTTTCACC
Brassica napus cultivar Xiang5A chromosome 10.
CP151905.1:1308349-1308366
CCAAAAAGCTGCGTGAAGAGTATGACTTAG1308349CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica napus cultivar Xiang5A chromosome 15.
CP151910.1:1299261-1299278
CCAATAAACTGCGGGAAGAGTATGACTTAA1299261CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Annulohypoxylon stygium strain TJAS01 chromosome 3.
CP157830.1:2088785-2088802
AGACGGAAGCCGCGATCCTGGGCGGGGTCT2088785CCGAATCTGACTTGGACACCTCTGCCGGGCTCGAGGCTGTAGGGAAAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1335573-1335590
CCAAAAAGCTGCGTGAAGAGTATGACTTAG1335573CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:1221557-1221574
CCAATAAACTGCGGGAAGAGTATGACTTAA1221557CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Brassica rapa genome, scaffold: A10.
LR031577.1:1378794-1378811
CCAAAACGCTGCGTGAAGAGTATGACTTAG1378794CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:1191136-1191153
CCAATAAACTGCGGGAAGAGTATGACTTAA1191136CCGAATCTGACTTGGACACAATGAGGTTTCTTATTGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:29063579-29063596
CCAATAAACTGCGTGAAGAGTATGACTTAA29063579CCGAATCTGACTTGGACACGATGAGGTTTCTCATCGACGTGTTTCGCC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:1376415-1376432
CCAAAACGCTGCGTGAAGAGTATGACTTAG1376415CCGAATCTGACTTGGACACAATGAGGTTTCTTATCGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:1051130-1051147
CCAATAAACTGCGTGAAGAGTATGACTTAA1051130CCGAATCTGACTTGGACACGATGAGGTTTCTCATCGACGTGTTTCGCC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:25517857-25517874
CCACTAAACTACGTGAAGAGTATGACTTAC25517857CCGAATCTGACTTGGACACAATGAGATTTCTTATCGACGTGTTTCACT
Lepidium didymum genome assembly, chromosome: 3.
OY986993.1:1108223-1108240
CGAACAAACTGTGTGAAGAGTTTGACCTAA1108223CCGAATCTGACTTGGACACAATGAGATTTCTTATCGAGGTGTTTCACC
Hypericum pulchrum genome assembly, chromosome: 1.
OZ066710.1:34473642-34473659
TAACTCGAACACACAATACACTTCAAAAAT34473642CCGAATCTGACTTGGACAGAACCCACACACAATAATCCGAATCTAAAT
Luidia sarsii genome assembly, chromosome: 17.
OX465117.1:14888962-14888979
ACATCCTCCCAAGGGTCGGAGACTCTGACT14888962CCGAATCTGACTTGGACAGTTTATTTTGAGCCTTTGAAATGAGTTACT
Clathrolucina costata genome assembly, chromosome: 10.
OZ218128.1:72478586-72478603
AGCAACTTAGTTAGCCCTCCCTTCAAGGCG72478586CCGAATCTGACTTGGACAGAGTGTAGCAGCGCGGAAATTGCTAGTTAT
Bufo bufo genome assembly, chromosome: 2.
LR991668.1:198164405-198164422
ATCTGTATTTTGATGTAACCTGAACTGAAT198164405CCGAATCTGACTTGGACAAACGTTTTTTCACCTAACCGTTTTCACTTT
Knipowitschia caucasica genome assembly, chromosome: 5.
OZ035827.1:30095552-30095569
CCTCCTCGTTCGGGGGCGACACCAGCAGAT30095552CCGAATCTGACTTGGACAGACTCCTCGCCAGCTTCAGGTCTCCGGGAG
OL6004F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6004, mRNA sequence.
EH423427.1:321-338
AGTGAAACAAGTCGATAAGAAACCTCATTG321TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
0189365 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092264.1:314-331
AGTGAAACACGTCGATAAGAAATCTCATTG314TGTCCAAGTCAGATTCGGGTAGGTCAAGCTCTTCAGGCAGTTTATTGG
0189366 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092265.1:314-331
AGTGAAACACGTCGATAAGAAATCTCATTG314TGTCCAAGTCAGATTCGGGTAGGTCAAGCTCTTCAGGCAGTTTATTGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1095.
FX692061.1:421-438
GGCGAAACACGTCGATAAGAAACCTCATTG421TGTCCAAGTCAGATTCGGCTAAGTCATACTCTTCACGCAGCTTTTTGG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11107.
FX692407.1:243-260
AGTGAAACACGTCGATAAGAAATCTCATTG243TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6156.
FX726501.1:149-166
AGTGAAACACGTCGATAAGAAATCTCATTG149TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica rapa subsp. pekinensis GSS, clone KBrH061D17, end read, primer SP6.
AJ860491.1:790-807
AGTGAAACACGTCGATTAGAAATCTCATTG790TGTCCAAGTCAGATTCGGTTTAGTCCAGCTCTTCCCGCAGTTTATTGG
KBrH018M11F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH018M11, genomic survey sequence.
DX890886.1:563-580
AGTGAAACACGTCGATAAGAAATCTCATTG563TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
BOT01-40J10TF BOT01 Brassica oleracea genomic clone BOT01-40J10, genomic survey sequence.
FI704668.1:603-620
AGTGAAACAAGTCGATAAGAAACCTCATTG603TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68818820-68818837
AGTGAAACACGTCGATAAGAAATCTCATTG68818820TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCAGGCAGTTTATTGG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25406543-25406560
GGCGAAACACGTCGATAAGAAACCTCATTG25406543TGTCCAAGTCAGATTCGGCTAAGTCATACTCTTCACGCAGCTTTTTGG
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:58062389-58062406
GGCGAAACACGTCAATAAGAAACCTCATTG58062389TGTCCAAGTCAGATTCGGTTAAGTCATACTCTTCCCGCAGTTTATTGG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52763679-52763696
AGTGAAACACGTCGATAAGAAATCTCATTG52763679TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCAGGCAGTTTATTGG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40813877-40813894
AGTGAAACAAGTCGATAAGAAACCTCATTG40813877TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica rapa genome, scaffold: A09.
LR031568.1:56860627-56860644
AGTGAAACACGTCGATAAGAAATCTCATTG56860627TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67384652-67384669
AGTGAAACACGTCGATAAGAAATCTCATTG67384652TGTCCAAGTCAGATTCGGTTAGGTCAAGCTCTTCACGCAGTTTATTGG
Thuidium tamariscinum genome assembly, chromosome: 7.
OX344755.2:1961197-1961214
TGGTTCTTTGCGAGGAAAAAAGATACCATA1961197TGTCCAAGTCAGATTCGGCAACTTACTGCTGAAATATTTTAATTTTAG
Chionographis japonica genome assembly, chromosome: 7.
OX393555.1:39931136-39931153
ACCCGTCAAATGTAAGAATTCTTTGGATTA39931136TGTCCAAGTCAGATTCGGGTTATGTCTGTGTTTGTTTTGGGTTAAGTC
Iris foetidissima genome assembly, chromosome: 12.
OZ123572.1:153553415-153553432
GTTACCTTAGGGCCGTGAATCGATACTTTG153553415TGTCCAAGTCAGATTCGGGTACCGACATACGTTAGCGGAGTCGAGTAT
Eudasyphora cyanicolor genome assembly, chromosome: 3.
OZ005736.1:288387187-288387204
ACGCTGCTGATATTACAATATCTGAAGGTC288387187TGTCCAAGTCAGATTCGGCTGAAATATTACGAATAATTTCGGAACGAA
Zygaena sarpedon genome assembly, chromosome: 13.
OZ202032.1:1782077-1782094
TTTACCTTTATCTCTGGCTACGTACTGGCC1782077TGTCCAAGTCAGATTCGGACTCAGTATCTATAAATAGGATTGTAGGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ccgaatctgacttggaca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ccgaatctgacttggaca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.928 | 1.919 | search_plus_done; http://172.18.8.135:50800/match?q=CCGAATCTGACTTGGACA&k=0&no_gap=0&offset=0&limit=50
2.550 | 0.622 | search_minus_done; http://172.18.8.135:50800/match?q=TGTCCAAGTCAGATTCGG&k=0&no_gap=0&offset=0&limit=3
2.563 | 0.014 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).