GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-19 17:44:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 17.
OX090925.1:34361021-34361038
TTGGTTCTTATTTTTCACCCTTGCCCAGCC34361021CTCCCTTCTTCTTGATCATTTTATTTGATAAAGTATTCTTAGCATGAT
Muscardinus avellanarius genome assembly, chromosome: 4.
OY726560.1:72065688-72065705
TAGACTTTCTAGAAATGACACACAATCTTT72065688CTCCCTTCTTCTTGATCATGTCTTCCTAGCTGAAGGTGAGTAAGGACC
Heterocephalus glaber genome assembly, chromosome: 18.
OZ001083.1:16593233-16593250
CAGTGGTCCTTTTTATTTCAGTTCTCCCGC16593233CTCCCTTCTTCTTGATCACTCAGCCCAGATGGCGCTCTCTGTCCTCTA
Heterocephalus glaber genome assembly, chromosome: 18.
OZ001126.1:18357634-18357651
CAGTGGTCCTTTTTATTTCAGTTCTCCCGC18357634CTCCCTTCTTCTTGATCACTCAGCCCAGATGGCGCTCTCTGTCCTCTA
Felis catus Senzu DNA, chromosome: E3, American Shorthair breed.
AP023167.1:22365135-22365152
TGATTTCTCTTGTTCTTAATGGTTCCTTGT22365135CTCCCTTCTTCTTGATCAGATTAATTTAAGATTTCCCTTTTTTCTTAT
Cervus elaphus genome assembly, chromosome: 19.
OU343096.1:77316986-77317003
TTTCATGATAGTCATTTGTAGCTTATATCT77316986CTCCCTTCTTCTTGATCAGTCCTCATAGAAGTTTATAATATTTTTTTA
Orcinus orca genome assembly, chromosome: 13.
OW443373.1:85949125-85949142
GCTCCCTCTTTGTTTATTTCGGCGCATCCA85949125CTCCCTTCTTCTTGATCAGGGACTCATGGTCCGGTGCAGAATGGCAAC
Lagenorhynchus albirostris genome assembly, chromosome: 13.
OX459085.1:83668403-83668420
GCTCCCTCTTTGTTTATTTCGGCGCATCCA83668403CTCCCTTCTTCTTGATCAGGGACTCATGGTCCGGTGCAGAATGGCAAC
Erinaceus europaeus genome assembly, chromosome: 10.
OX485820.1:122907651-122907668
CCCTGCTCCAGTAACCACGTTCCCTCTAAC122907651CTCCCTTCTTCTTGATCACAGTGAATGTCAGTTTCCCTCAAGTGTGGG
Vespertilio murinus genome assembly, chromosome: 14.
OZ004718.1:19383747-19383764
CGGGATGTTTGTTTTCCTTCCTACCTCCCT19383747CTCCCTTCTTCTTGATCACCCAGAAGATAATCTCTGGGTTCACCCCCA
0270810 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO937239.1:332-349
TCCAAGTAATCTTATGGGTCGATTCTTCCA332CTCCCTTCTTCTTGATCACCGCCGAAACAACCGCTCCACCTTTCACAC
Sus scrofa genomic clone PigE-144J19, genomic survey sequence.
CT153244.1:159-176
CCTCATGCCCAGTAAGCTTGGTCCAACCCT159CTCCCTTCTTCTTGATCATTGATCTGGAAGCACTGGGACAGGGAGAGG
Sus scrofa genomic clone PigE-210E19, genomic survey sequence.
CT238069.1:124-141
CCTCATGCCCAGTAAGCTTGGTCCAACCCT124CTCCCTTCTTCTTGATCATTGATCTGGAAGCACTGGGACAGGGAGAGG
BOT01-97K22TR BOT01 Brassica oleracea genomic clone BOT01-97K22, genomic survey sequence.
FI744883.1:574-591
CTAAAAACCTATATTGTAATACAAAAACAG574CTCCCTTCTTCTTGATCAAGGGACAAACCGAAAAAGTAAAATCATGTA
BOT01-96L11TF BOT01 Brassica oleracea genomic clone BOT01-96L11, genomic survey sequence.
FI748524.1:574-591
CTAAAAACCTATATTGTAATACAAAAACAG574CTCCCTTCTTCTTGATCAAGGGACAAACCGAAAAAGTAAAATCATGTA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-45P4.
CU041357.2:77447-77464
CTAGCAACTCTTGACACAGTTAACCAATTG77447CTCCCTTCTTCTTGATCACTTTCTTTTCCTCTCACCCCGCAGGCCATG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-391B5.
FP236554.2:70620-70637
CTAGCAACTCTTGACACAGTTAACCAATTG70620CTCCCTTCTTCTTGATCACTTTCTTTTCCTCTCACCCCGCAGGCCATG
Talaromyces marneffei strain TM4 chromosome 5, complete sequence.
CP015872.1:2471721-2471738
CAAGGTGTTTTATTTTATTTTTATGTTTTT2471721CTCCCTTCTTCTTGATCAAAACAAAGAGTAAACTGATACTAAAAGGGG
Candida albicans SC5314 chromosome 4, complete sequence.
CP017626.1:1179264-1179281
AGATAAAGGATAAATGCACCCCCCCCCCCC1179264CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Candida albicans strain SC5314-P0 chromosome 4A.
CP025153.1:1179464-1179481
CAAGATAAAGGATAAATGCACCCCCCCCCC1179464CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Candida albicans strain SC5314-P0 chromosome 4B.
CP025161.1:1179281-1179298
GATAAAGGATAAATGCACCCCCCCCCCCCA1179281CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Candida albicans strain SC5314-GTH12 chromosome 4A.
CP025170.1:1179176-1179193
CAAGATAAAGGATAAATGCACCCCCCCCCC1179176CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Candida albicans strain SC5314-GTH12 chromosome 4B.
CP025178.1:1178865-1178882
GATAAAGGATAAATGCACCCCCCCCCCCCA1178865CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Candida albicans strain SC5314 chromosome 4.
CP128827.1:1207077-1207094
GATAAAGGATAAATGCACCCCCCCCCCCCA1207077CTCCCTTCTTCTTGATCAAGGTTAACCTTAGTGTTAAGTTATATATGG
Canna indica chromosome 1.
CP136890.1:37271265-37271282
TCATGGAAAAATTTTGAGGAGCCGCCGCCC37271265CTCCCTTCTTCTTGATCATTGATGGTTATTCTTGATCTTAATGATTCT
Canna indica chromosome 4.
CP136893.1:41073688-41073705
TCATGGAGAAATTTTGAGGAGCTGCTGCCC41073688CTCCCTTCTTCTTGATCATTGATGGTTATTCTTGATCTTAATGATTCT
Canna indica chromosome 6.
CP136895.1:58060627-58060644
TCATGGCGAAATTTTGAGGAGCCGCCGCCC58060627CTCCCTTCTTCTTGATCATTTATGGTTATTCTGATCTTAATGGTTCTT
Avena insularis genome assembly, chromosome: 2C.
OU342339.1:285222378-285222395
AATGTATCTGTACCATTTGCAGCAGGCTGC285222378CTCCCTTCTTCTTGATCAATTGCATGATGACTTGGTCCTGCTTCCGCA
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:310616040-310616057
TCGGGGTCACTCATTGAGAGTGCATCATCA310616040CTCCCTTCTTCTTGATCATACTCCACAACCTTGGCCTTCAAGGCAAGA
Avena sativa genome assembly, chromosome: 2C.
OU342386.1:306373553-306373570
AATGTATCTGTACCATTTGCAGCAGGCTGC306373553CTCCCTTCTTCTTGATCAATTGCATGATGACTTGGTCCTGCTTCCGCA
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:196758664-196758681
TCGGGGTCACTCACTGAGAGTGCATCATCA196758664CTCCCTTCTTCTTGATCATACTCCACAACCTTGGCCTTCAAGGCAAGA
Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:136837498-136837515
TCGGGGTGGCTCATTGAAAGTGCATCATCA136837498CTCCCTTCTTCTTGATCATACTCCACAACCTTGGCCTTCAAGGCAAGA
Thlaspi arvense genome assembly, chromosome: 5.
OU466861.1:22436689-22436706
GAAGATCCTGAAGTTTGATAACAAGGGTAA22436689CTCCCTTCTTCTTGATCATTGCTTTCTCCATGGAGCTGAACAAGAAGA
Avena sativa genome assembly, chromosome: 9.
OV702287.1:330848606-330848623
AATGTATCTGTACCATTTGCAGCAGGCTGC330848606CTCCCTTCTTCTTGATCAATTGCATGATGACTTGGTCCTGCTTCCGCA
Avena sativa genome assembly, chromosome: 10.
OV702288.1:209001804-209001821
TCGGGGTCACTCACTGAGAGTGCATCATCA209001804CTCCCTTCTTCTTGATCATACTCCACAACCTTGGCCTTCAAGGCAAGA
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291432.1:1232198-1232215
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1232198CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291453.1:1524039-1524056
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1524039CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291489.1:1516015-1516032
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1516015CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291516.1:1029613-1029630
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1029613CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291652.1:1759657-1759674
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1759657CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Arabidopsis thaliana genome assembly, chromosome: 4.
OX291763.1:1401665-1401682
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1401665CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Hedera helix genome assembly, chromosome: 6.
OX359269.1:32875326-32875343
TTCTTGTCATAGCTTGTTAGGACTCCTCCT32875326CTCCCTTCTTCTTGATCAAACCCTCTAGCTTTTTAGAATGAACTCTCA
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:554045824-554045841
TCATCTTCGTCCTCATTTGAGGCCATTTCC554045824CTCCCTTCTTCTTGATCATAAGACACAACCATGTCCTTCATATGCTTA
Vicia faba genome assembly, chromosome: 1L.
OX451736.1:1711121720-1711121737
CAGGCCTGTACCCTCCTCTATGTATGCTGC1711121720CTCCCTTCTTCTTGATCAGAGGGATTTGTTTACAAATGTTAGCCTCAA
Arabidopsis thaliana genome assembly, chromosome: 4.
OX461203.1:1254165-1254182
CCCAAGAAATCTTCTGGGTTGATTCTTCCA1254165CTCCCTTCTTCTTGATCACAGCCGAAGCAACAGCTCCACTTCTTCCAC
Sphenostylis stenocarpa genome assembly, chromosome: 6.
OY731403.1:15834646-15834663
TTGCTTCACCCTGCTTTCAAAGCTATCAAG15834646CTCCCTTCTTCTTGATCATGGAGGTTATAAATTACATTGTGTCATCGC
Galeopsis tetrahit genome assembly, chromosome: 16.
OY776134.1:35615702-35615719
CATCAGGGACAACTTCCCTGATCCTCTTCT35615702CTCCCTTCTTCTTGATCACCACCATAGGGAACTTTTTCCTTATCTCCT
Umbilicus rupestris genome assembly, chromosome: 4.
OY787608.1:1019858-1019875
CAGTTCAGTTTTGCGTCTATCTCAAAATCT1019858CTCCCTTCTTCTTGATCAATATTCTCTACCGATGAATAGCGTGGAACG
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:921107626-921107643
CTTTTGATTTTTTTGTTTCCCTACCTTCCT921107626CTCCCTTCTTCTTGATCAAATCCATGGTGGAGCTTGAGATAGAGTTTG
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:1237300647-1237300664
CACCATGTTTATGAAGGTCGCAAATTTCTT1237300647CTCCCTTCTTCTTGATCATGGACTTGGATATGTAGTGGCTTTTAAAGG
Alisma plantago-aquatica genome assembly, chromosome: 6.
OY856414.1:717886589-717886606
TAATAGTAACATGTTTTATAGATATGGCTT717886589CTCCCTTCTTCTTGATCAATAGATTCATCTCCACCTTTATTTTTCTTT
Narthecium ossifragum genome assembly, chromosome: 8.
OY986970.1:5506994-5507011
TTAACACTTTCTTGTTTCTCTTGCGTCAAT5506994CTCCCTTCTTCTTGATCACACATGGTTAGGAGTTCATTAACTAATTAG
Geranium rotundifolium genome assembly, chromosome: 12.
OY987322.1:26830851-26830868
AAACCTTCTAAAACAACTTCACTGTTATTA26830851CTCCCTTCTTCTTGATCACTTCCCCATTCAAGTCCTAACTCATACAAA
Methanobacterium lacus strain AL-21, complete genome.
CP002551.1:566398-566415
AAATTGCAAATGCTGGTCCGTACTCTGTAG566398CTCCCTTCTTCTTGATCACGTAGTTACCTGCATTTTTAACCTTTTCTA
Pseudoalteromonas phenolica strain KCTC 12086 chromosome I, complete sequence.
CP013187.1:2363936-2363953
AAGTGAACTTCCGCTCGGTAATAGCTTTCA2363936CTCCCTTCTTCTTGATCATGACTAAAGCTTGGCTGAACGTGTTCTTTC
Sperchonopsis phreaticus isolate Hyd031 28S ribosomal RNA gene, partial sequence.
KM100978.1:2891-2908
CTCGGTTGAGCGGAGGTCGGAGTCTAAAAA2891CTCCCTTCTTCTTGATCAAACTTGGAAAGTAGGTGCCGTTCAAGTAAC
Melanostoma mellinum genome assembly, chromosome: 2.
OU612059.1:38920354-38920371
TTAGAGCTTAGCAGATGGCCGCGGTGTAGT38920354CTCCCTTCTTCTTGATCATAGATCCAAGACATTTAAACTGTACACACT
Thera britannica genome assembly, chromosome: 3.
OW618036.2:4074393-4074410
CCAAGGATGCTGTGGAAATCCCTATTTTTC4074393CTCCCTTCTTCTTGATCAGCAATGAGTGCAGCTCCAATTCTTCTTTCC
Melanostoma scalare genome assembly, chromosome: 3.
OX456986.1:51665134-51665151
CGTTGTTGTGTATGTTCTAGTGTATTGCTT51665134CTCCCTTCTTCTTGATCAGTTGCTGATAAGGCGCATTAAACTGAACGC
Stomoxys calcitrans genome assembly, chromosome: 2.
OY720436.1:7640650-7640667
TGGTCTGAATCGATCAATAGCTTGATACAG7640650CTCCCTTCTTCTTGATCACCTACAAGGCGCAATTCTTATCCGAATAAA
Thysanoteuthis rhombus genome assembly, chromosome: 4.
OY735201.1:23558209-23558226
TAGGATGATAGTTGCCGAAGTTGTGATTAT23558209CTCCCTTCTTCTTGATCATTTTTCTTGGATAGATGTTTTGATATAAGC
Thysanoteuthis rhombus genome assembly, chromosome: 31.
OY735228.1:42039847-42039864
ATAAGGGGGAAGAGGCCGAGCCAAGTTCAA42039847CTCCCTTCTTCTTGATCAAGCCGGAGGCTTCAAAATGGAAGTGAAATC
Crambe crambe genome assembly, chromosome: 5.
OZ004585.1:3223926-3223943
TGGTGAGAGTACCAAACCCAGCACTGCTCT3223926CTCCCTTCTTCTTGATCAGCTTATCTTTAATCAGAATCTTATTCTTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ctcccttcttcttgatca
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ctcccttcttcttgatca | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.292 | 0.283 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCCTTCTTCTTGATCA&k=0&no_gap=0&offset=0&limit=50
0.352 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=TGATCAAGAAGAAGGGAG&k=0&no_gap=0&offset=0&limit=0
0.352 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).