GGGenome | Results

39RDBRT_UP_015_A01_05APR2004_015 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX270847.1:478-497

GCCACCATTCCTCGTCTTACCGTCGCCACC478GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica oleracea var. viridis mRNA, clone: KALE-045P17, 5' end sequence.
DK473119.1:343-362

CTTACCGTCGCCACCGCTCCTCCTCTCACC343GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACTGCATCTCC

Brassica oleracea var. viridis mRNA, clone: KALE-140M02, 3' end sequence.
DK568935.1:22-41

GCCACCGCTCCTCCTCTCACC22GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACTGCATCTCC

BOGUD83TR BOGU Brassica oleracea genomic clone BOGUD83, genomic survey sequence.
BH480997.1:507-526

CTTACCGTCGCCACCGCTCCTCCTCTCACT507GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC

BOHIJ81TF BOHI Brassica oleracea genomic clone BOHIJ81, genomic survey sequence.
BH488190.1:390-409

CTTACCGTCGCCACTGCTCTTCCTCTCACC390GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACAGCATCTCC

odg48h06.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH942318.1:92-111

CTTACCGTCGCCACCGCTCCTCCTCTCACT92GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC

BOMSB33TF BO_2_3_KB Brassica oleracea genomic clone BOMSB33, genomic survey sequence.
BZ515122.1:622-641

CTTACCGTCGCCACCGCTCCTCCTCTCACC622GTGGATGCTGAACTTACAAGATCTTTTCGGCTCTCCTCCACTGCATCTCC

Brassica napus GSS, clone JBnB036I02, end read, primer SACR2(reverse).
CU943881.1:147-166

CTTATCGTCGCCACCGCTCCTCCTCTCACC147GTGGATGCTGAACTTACAAGATTTGGTCGGCTCTCCTCCACCGCATATCC

BOT01-49G12TF BOT01 Brassica oleracea genomic clone BOT01-49G12, genomic survey sequence.
FI709151.1:141-160

CTTACCGTCGCCACCGCTCCTCCTCTCACC141GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

BOT01-97P4TR BOT01 Brassica oleracea genomic clone BOT01-97P4, genomic survey sequence.
FI746253.1:180-199

CTTACCGTCGCCACCGCTCCTCCTCTCACT180GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC

Setaria viridis cultivar ME034v chromosome 9.
CP050803.1:16396552-16396571

GCGGGAGTTAGCTGATAGTTGAAAGTTGGT16396552GTGGATGCTGAACTTACAAGTGTAGAAGCATGAACTGTGCTTGAATTTAC

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:7836826-7836845

CTTACCGTCGCCACCGCTCCTCCTCTCACC7836826GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTTCTCCACCGCATCTCC

Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:9698832-9698851

CTTATCGTCGCCACCGCTCCTCCTCTCACC9698832GTGGATGCTGAACTTACAAGATTTGGTCGGCTCTCCTCCACCGCATATCC

Brassica napus genome assembly, chromosome: A07.
HG994361.1:26272631-26272650

CTTACCGCCGCCACCGCTCCTCCTCTCACT26272631GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica napus genome assembly, chromosome: C02.
HG994366.1:10914125-10914144

CTTACCGTCGCCACCACTCCTCCTCTCACC10914125GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCTTCCACCGCATCTCC

Brassica napus genome assembly, chromosome: C08.
HG994372.1:11925703-11925722

CTTACCGTCGCCACCGCTCCTCCTCTCACC11925703GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica rapa genome, scaffold: A01.
LR031571.1:21011577-21011596

CTTACCATCGCCACCGCTCCTCCTCTCACC21011577GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica rapa genome, scaffold: A07.
LR031574.1:19870559-19870578

GCCACCATTCCTCGTCTTACCGTCGCCACC19870559GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:58565754-58565773

CTTACCGTCGCCACCGCTTCTCCTCTCACC58565754GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGAATCTCC

Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:12307380-12307399

CTTACCGTCGCCACCGCTCCTCCTCTCACC12307380GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:12061652-12061671

CTTACCGTCGCCACCGCTCCTCCTCTCACC12061652GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGAGATCTC

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:20161733-20161752

GCCACCATTCCTCGTCTTACCGTCGCCACC20161733GTGGATGCTGAACTTACAAGATCTGGTCGGCTCTCCTCCACCGCATCTCC

Squalius cephalus genome assembly, chromosome: 21.
OX439267.1:28678696-28678715

GATCAATATTGTCTTTGCTAATATGATTCT28678696CTTGTAAGTTCAGCATCCACCTTCTCTGTACACTACACTACTTCCAGATT

BOGHI33TR BOGH Brassica oleracea genomic clone BOGHI33, genomic survey sequence.
BH519892.1:263-282

GGAGATGCAGTGGAGGAGAGCCGAAAAGAT263CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG

BOGLZ51TF BOGL Brassica oleracea genomic clone BOGLZ51, genomic survey sequence.
BH596499.1:81-100

GGAGATGCGGTGGAGGAGAGCCGACCAGAT81CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG

BOT01-6D7TF BOT01 Brassica oleracea genomic clone BOT01-6D7, genomic survey sequence.
FI690323.1:257-276

GGAGATGCAGTGGAGGAGAGCCGAAAAGAT257CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:42193158-42193177

GGAGATGCGGTGGAGGAGAGCCGACCAGAT42193158CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3109538-3109557

GGAGATGCGGTGGAGGAGAGCCGACCAGAT3109538CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:42304238-42304257

GGAGATGCGGTGGAGGAGAGCCGACCAGAT42304238CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica napus genome assembly, chromosome: A02.
HG994356.1:8216547-8216566

GGAGATGCGGTGGAGGAGAGCCGACCAGAT8216547CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica napus genome assembly, chromosome: A03.
HG994357.1:35424455-35424474

GGAGATGCGGTGGAGGAGAGCCGACCAGAT35424455CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG

Brassica napus genome assembly, chromosome: C01.
HG994365.1:43559294-43559313

GGATATGCGGTGGAGGAGAGCCGACCAAAT43559294CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGATAAG

Brassica rapa genome, scaffold: A02.
LR031573.1:30725861-30725880

GGAGATGCGGTGGAGGAGAGCCGACCAGAT30725861CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:22632-22651

GGAGATGCTGTGGAGGAGAGCCGACCAGAT22632CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:74669-74688

GGAGATGCTGTGGAGGAGAGCCGACCAGAT74669CTTGTAAGTTCAGCATCCACGGTGAGAGGAAGAGCAGTGGCGACGGTAAG

Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:42896343-42896362

GGATATGCGGTGGAGGAGAGCCGACCAAAT42896343CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGACGATAAG

Brassica rapa genome assembly, chromosome: A02.
LS974618.2:31659604-31659623

GGAGATGCGGTGGAGGAGAGCCGACCAGAT31659604CTTGTAAGTTCAGCATCCACAGTGAGAGGAGGAGCGGTGGCGACGGTAAG

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:36689350-36689369

GGAGATGCGGTGGAGGAGAGCCGACCAGAT36689350CTTGTAAGTTCAGCATCCACGGTGAGAGGAGGAGCGGTGGCGATGGTAAG

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Debug Info:

0.009 | 0.009 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=GTGGATGCTGAACTTACAAG&k=0&no_gap=0&offset=0&limit=50
0.484 | 0.139 | search_minus_done; http://172.18.8.135:50400/match?q=CTTGTAAGTTCAGCATCCAC&k=0&no_gap=0&offset=0&limit=28
0.494 | 0.010 | cgi_end;

Summary:

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