GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 15:56:16, GGGenome : DDBJ release 134.0, HUM division (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens PAC clone RP5-982C16 from 7, complete sequence.
AC004547.1:33513-33527
AACTAACACCCATAAAAGGTATGACTCTTT33513AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens clone RP11-225G18 from 7p14-15, complete sequence.
AC007350.1:94097-94111
TCTACAGATTTTGGATTTACCAGCCCCCAC94097AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens, clone RP11-84A1, complete sequence.
AC007511.8:14923-14937
ACTCACTGGATCCAATCAGCATAATGTCAT14923AATGTTGTCAATGAAAAGAGTTGAACTCTGTAAAATATTTGAAGA
Homo sapiens chromosome 19 clone CTC-490E21, complete sequence.
AC008537.5:115366-115380
CTCCCTTAGGAGAGCTGTTAACATTATACT115366AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens BAC clone RP11-387H5 from 2, complete sequence.
AC020571.9:33887-33901
AATGCCCCACATTTCATTAAGGGTGATGAC33887AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens chromosome 11, clone RP11-72C9, complete sequence.
AC067902.6:101358-101372
CTTTTCTCTATTCACTGTCCTCAATGCTAG101358AATGTTGTCAATGAACAAGACATATCTATGTTCCAGGAAACTCAA
Homo sapiens chromosome 8, clone RP11-566H8, complete sequence.
AC068672.11:2480-2494
TTTGAAAAAAGAGACACAATAAAACTTAAT2480AATGTTGTCAATGAAAAGTGGAAATATCGATGAATTTAAAAATAC
Homo sapiens 12 BAC RP3-361K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC073616.17:74518-74532
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA74518AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Homo sapiens BAC clone RP11-348A21 from 7, complete sequence.
AC079231.6:83390-83404
TCTTCTCAGGCAATATTTGTTGAACGAACC83390AATGTTGTCAATGAAGCTAATGAGCTGACTCAGGCCAGGCACCAC
Homo sapiens chromosome 3 clone RP11-321I9 map 3p, complete sequence.
AC087590.2:119880-119894
GGACTATTATATGACTATATTATAATCTTA119880AATGTTGTCAATGAATATATGTTTCCAATTTCTGGCTATTACAAT
Homo sapiens chromosome 3 clone RP11-241K3, complete sequence.
AC093928.2:30245-30259
GCCTGTTTTTCATATGCATATGTAATAGGG30245AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens 3 BAC RP11-529P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC117470.8:37788-37802
AATTTGAATATTAATTTTAAAATTTATTCA37788AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens FOSMID clone ABC27-1763L3 from chromosome 19, complete sequence.
AC240664.3:26187-26201
CTCCCTTAGGAGAGCTGTTAACATTATACT26187AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens CYP2GP2 gene, partial sequence.
AH010218.2:780-794
CTCCCTTAGGAGAGCTGTTAACATTATACT780AATGTTGTCAATGAAAAAGCTAANNNNNNNNNNNNNNNNNNNNNN
Homo sapiens CYP2GP1 gene, partial sequence.
AH010219.2:779-793
CTCCCTTAGGAGAGCTGTTAACATTATACT779AATGTTGTCAATGAAAAAGCTAANNNNNNNNNNNNNNNNNNNNNN
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:192407084-192407098
AATGCCCCACATTTCATTAAGGGTGATGAC192407084AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:57256108-57256122
GCCTGTTTTTCATATGCATATGTAATAGGG57256108AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:97421811-97421825
AATTTGAATATTAATTTTAAAATTTATTCA97421811AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens DNA, chromosome 5, nearly complete genome.
AP023465.1:10371817-10371831
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC10371817AATGTTGTCAATGAAAGATCAGCAGATCAGTGCATTATACCCAGG
Homo sapiens DNA, chromosome 7, nearly complete genome.
AP023467.1:34145923-34145937
TCTACAGATTTTGGATTTACCAGCCCCCAC34145923AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens DNA, chromosome 7, nearly complete genome.
AP023467.1:77405138-77405152
AACTAACACCCATAAAAGGTATGACTCTTT77405138AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens DNA, chromosome 12, nearly complete genome.
AP023472.1:79423102-79423116
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79423102AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Homo sapiens DNA, chromosome 19, nearly complete genome.
AP023479.1:41053591-41053605
CTCCCTTAGGAGAGCTGTTAACATTATACT41053591AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens isolate CHM13 chromosome 19.
CP068259.2:43712963-43712977
CTCCCTTAGGAGAGCTGTTAACATTATACT43712963AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTT
Homo sapiens isolate CHM13 chromosome 12.
CP068266.2:79086057-79086071
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79086057AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Homo sapiens isolate CHM13 chromosome 7.
CP068271.2:34258801-34258815
TCTACAGATTTTGGATTTACCAGCCCCCAC34258801AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens isolate CHM13 chromosome 7.
CP068271.2:79974035-79974049
AACTAACACCCATAAAAGGTATGACTCTTT79974035AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens isolate CHM13 chromosome 5.
CP068273.2:9699165-9699179
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9699165AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:57240759-57240773
GCCTGTTTTTCATATGCATATGTAATAGGG57240759AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:100064270-100064284
AATTTGAATATTAATTTTAAAATTTATTCA100064270AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:196697199-196697213
AATGCCCCACATTTCATTAAGGGTGATGAC196697199AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens isolate NA24385 chromosome 7.
CP139514.1:34224669-34224683
TCTACAGATTTTGGATTTACCAGCCCCCAC34224669AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens isolate NA24385 chromosome 7.
CP139514.1:79992181-79992195
AACTAACACCCATAAAAGGTATGACTCTTT79992181AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens isolate NA24385 chromosome 5.
CP139516.1:9794061-9794075
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9794061AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:57170855-57170869
GCCTGTTTTTCATATGCATATGTAATAGGG57170855AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:99860497-99860511
AATTTGAATATTAATTTTAAAATTTATTCA99860497AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:196107233-196107247
AATGCCCCACATTTCATTAAGGGTGATGAC196107233AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens isolate NA24385 chromosome 19.
CP139524.1:43332291-43332305
CTCCCTTAGGAGAGCTGTTAACATTATACT43332291AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTT
Homo sapiens isolate NA24385 chromosome 12.
CP139531.1:79339358-79339372
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79339358AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Homo sapiens isolate NA24385 chromosome 7.
CP139537.1:34251711-34251725
TCTACAGATTTTGGATTTACCAGCCCCCAC34251711AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
Homo sapiens isolate NA24385 chromosome 7.
CP139537.1:79194945-79194959
AACTAACACCCATAAAAGGTATGACTCTTT79194945AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
Homo sapiens isolate NA24385 chromosome 5.
CP139539.1:9796021-9796035
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9796021AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:57247983-57247997
GCCTGTTTTTCATATGCATATGTAATAGGG57247983AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:100360450-100360464
AATTTGAATATTAATTTTAAAATTTATTCA100360450AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:195874093-195874107
AATGCCCCACATTTCATTAAGGGTGATGAC195874093AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
Homo sapiens isolate NA24385 chromosome 19.
CP139547.1:43416961-43416975
CTCCCTTAGGAGAGCTGTTAACATTATACT43416961AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC
Homo sapiens isolate NA24385 chromosome 12.
CP139554.1:79297673-79297687
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79297673AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
Human BAC clone GS1-312P20 from 5p15.2, complete sequence.
AC002123.1:133597-133611
CCTGGGTATAATGCACTGATCTGCTGATCT133597TTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTC
Human BAC clone CTB-191D16, complete sequence.
AC002460.1:73482-73496
CAGAATATATTATCGCTTTAAACACAGATT73482TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence.
AC008962.9:39696-39710
AAGCCACCACACCCGGCCTATCTTAGCTTT39696TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj134hum/AATGTTGTCAATGAA
lang : en | db : ddbj134hum | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.087 | 0.079 | search_plus_done; http://172.18.8.135:50401/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.123 | 0.035 | search_minus_done; http://172.18.8.135:50401/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=3
0.125 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).