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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-22 16:37:37, GGGenome : DDBJ release 134.0, MAM division (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Muntiacus reevesi clone CH245-317L13, complete sequence.
AC164916.3:47673-47687
TTTGTTGTGATCCACACAGTGAAAGGTTTC47673AATGTTGTCAATGAAGCAGATTTTTTTTTCTGGAATTACTTTGGT
Felis catus Senzu DNA, chromosome: A1, American Shorthair breed.
AP023152.1:166839093-166839107
GAACAGTGGAAACGGGCTATGGATTACTTA166839093AATGTTGTCAATGAACTCAATTATATGACTCAGATTGTTATCATG
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:27033462-27033476
GCCTGTTTTTCATATGCATATGTAATAGTG27033462AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATACC
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:110851292-110851306
TTGTTTTCTTGTTTCATTCCCTTAATTATT110851292AATGTTGTCAATGAAGCAGGAATTACCCAAAATGATGAGGAAAGG
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:129472988-129473002
AGAGGGGTAAAAGTGATACCTCCTAAGACT129472988AATGTTGTCAATGAAGTAAATCCACGCCTATGAGAAGTTTACCTG
Felis catus Senzu DNA, chromosome: B1, American Shorthair breed.
AP023155.1:79705461-79705475
TTAATATTAATATTAAATGGATGCCCACAG79705461AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA
Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:25580446-25580460
CCTTGGTCAGTGTCCCCTCTTGCTTTTTAT25580446AATGTTGTCAATGAAGATTATTGGTATCTAAACACCACCCCACTC
Felis catus Senzu DNA, chromosome: B3, American Shorthair breed.
AP023157.1:82341786-82341800
TGATCATGAAAAATTGTATTTTTCTCACAA82341786AATGTTGTCAATGAAAAGAGCACTAAAAATAGTAGATAAAGTCTG
Felis catus Senzu DNA, chromosome: C1, American Shorthair breed.
AP023159.1:83666407-83666421
AGATAGAAAGAGAGAGAGAGAATGCAAATA83666407AATGTTGTCAATGAAATCACAGGCTACCAAAGGGGGGGGGGGAAA
Felis catus Senzu DNA, chromosome: D1, American Shorthair breed.
AP023161.1:18652903-18652917
GTGAGATCGTGTCCACTAAGCACTTACGCT18652903AATGTTGTCAATGAATAAATGCGTGCCTGCTAACATAAAGCTCGC
Felis catus Senzu DNA, chromosome: D1, American Shorthair breed.
AP023161.1:90041869-90041883
TGACAATGTGTCACTTTAGAGATTATCATT90041869AATGTTGTCAATGAAAAGCCATTTCTCATCATCCTTATGCCAGTT
Felis catus Senzu DNA, chromosome: D2, American Shorthair breed.
AP023162.1:845566-845580
CAGGGCTTGCAACTGTCATGCTCTGAAAAC845566AATGTTGTCAATGAATCAATCTCATGGCTTCTCTTTTTAGCTGTA
Felis catus Senzu DNA, chromosome: F1, American Shorthair breed.
AP023168.1:63887841-63887855
GGAATGTGTATGACAGAGAGAGAATTTCAA63887841AATGTTGTCAATGAAGGGCGCCTGGGTGGCTGAGTCGGCTAAGCA
Ovis canadensis canadensis isolate 43U chromosome 3 sequence.
CP011888.1:142772235-142772249
TCATAAGAAAATATGCATATAATGAAAAAC142772235AATGTTGTCAATGAAAATAGGCTGGAGGCAGAGTTCACTCCCTTC
Ovis canadensis canadensis isolate 43U chromosome 4 sequence.
CP011889.1:21413610-21413624
TTAAAGAATATCCGTTCACTGAGGAATCCT21413610AATGTTGTCAATGAAGAGTGAGTCAGATGTATGCCTGTGTCATTT
Ovis canadensis canadensis isolate 43U chromosome 5 sequence.
CP011890.1:61717643-61717657
TGGTGTGTGGAGGGAATGAAAGAGATTTTC61717643AATGTTGTCAATGAATGTGTAGAGTCCTTGGTTAAAAACATATAC
Ovis canadensis canadensis isolate 43U chromosome 5 sequence.
CP011890.1:99552206-99552220
GAACAGTGGAAACGAGCTATGGATTATTTA99552206AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
Ovis canadensis canadensis isolate 43U chromosome 9 sequence.
CP011894.1:55752123-55752137
TGTTTATATCTAACAAATTGGAAAACTTMA55752123AATGTTGTCAATGAAAGCTCTTAGAAACCAATGCAAATATACTTG
Ovis canadensis canadensis isolate 43U chromosome 14 sequence.
CP011899.1:39719142-39719156
GCATCTCCTTCTCTTTTCCAATWAGAGGGA39719142AATGTTGTCAATGAAATCAGCCAGCRGATAGCTGCWGCACTACCC
Ovis canadensis canadensis isolate 43U chromosome 20 sequence.
CP011905.1:11485142-11485156
CAGTGCATGGCACACAGTAGGTGTGCAGTA11485142AATGTTGTCAATGAATTGATGGAAGGATRGATGGATGAATTCTGG
Ovis canadensis canadensis isolate 43U chromosome X sequence.
CP011912.1:76907671-76907685
CCGTCAGCAGTAAGAGTTGCTGGTCTTTWA76907671AATGTTGTCAATGAATCTSCACATCTGGTCTATATGTGAAAAGAA
Ovis canadensis canadensis isolate 43U chromosome X sequence.
CP011912.1:87817335-87817349
GTTTACTCTTAAAACTTGAATAAAAGGATT87817335AATGTTGTCAATGAAATTGTAACCATTGATTTATTCAACCCATAT
Ovis canadensis canadensis isolate 43U chromosome X sequence.
CP011912.1:124264020-124264034
TTYMTTGTGATCCACACAGCTAAAAGTTTT124264020AATGTTGTCAATGAAGAAGTAGATGGTTTTCTGGAATTCYCTTGC
Bos mutus isolate yakQH1 chromosome 2.
CP027070.1:58722317-58722331
GAATTTTTCACCCACAGAGTCAAAGGCTTT58722317AATGTTGTCAATGAAATGGAAGTAGATGTTGTTCTGGAATTCCCT
Bos mutus isolate yakQH1 chromosome 7.
CP027075.1:63185744-63185758
GATGTGTGGAGGGAATGAAAGAAATTTTTC63185744AATGTTGTCAATGAATGTGTAGAGTCCTTGGTTAAAAACATATAT
Bos mutus isolate yakQH1 chromosome 7.
CP027075.1:101484954-101484968
GAACAGTGGAAACGAGCTATGGATTATTTA101484954AATGTTGTCAATGAACTCAACTACATGACTCAGATTGTTATCATG
Bos mutus isolate yakQH1 chromosome 9.
CP027077.1:82174346-82174360
CAACCACAAGAGATAGGCAGAATTTTCATC82174346AATGTTGTCAATGAATAAACTGAAGCAGAGAGAAGTTAAACAAGA
Bos mutus isolate yakQH1 chromosome 14.
CP027082.1:42232417-42232431
TGTTTATATGTAACAAATTGGAAAACTTCA42232417AATGTTGTCAATGAAATCTCTTAGAAACCAATGCAAATATACTTG
Bos mutus isolate yakQH1 chromosome 21.
CP027089.1:3144588-3144602
AATGTCTAGTTAAATGATGCTTTCGTTTTT3144588AATGTTGTCAATGAAACATCTTAAATCTCATTGCTCTGCTCACAG
Bos mutus isolate yakQH1 chromosome 23.
CP027091.1:11404335-11404349
CAGTGCCTGGCGCACAGTAGGTGTGCAGTA11404335AATGTTGTCAATGAATTGATGGAAGGATGGATGGATGAATTCCGG
Canis lupus familiaris breed Labrador retriever chromosome 04a.
CP050572.1:19437470-19437484
TTTTATATGCATTTCTGTTTCTTATGTTGT19437470AATGTTGTCAATGAAATTCATGAGAAAAATTTGAATGTGAGGTAG
Canis lupus familiaris breed Labrador retriever chromosome 04a.
CP050572.1:82092128-82092142
ATTCCCACTGACTAGGAATGTTTTCATTTA82092128AATGTTGTCAATGAAAACCAAATGTTAACACTAATCTCCTTTAAT
Canis lupus familiaris breed Labrador retriever chromosome 14a.
CP050589.1:35512662-35512676
TGCCTTATTGCTAATCATGGCACCCTTTGG35512662AATGTTGTCAATGAATGTTAACAGAAGTAAAAGAAGATATTCAAA
Canis lupus familiaris breed Labrador retriever chromosome 31a.
CP050592.1:21874994-21875008
TTAAAGTCATTGGTGTTTTCAGACGTTAAG21874994AATGTTGTCAATGAAATGTGGAGATGCTCCAGCCTTCCAGCTATT
Canis lupus familiaris breed Labrador retriever chromosome 13a.
CP050604.1:8038723-8038737
ATTTTTAAAAATACATATAATACTCTCAAT8038723AATGTTGTCAATGAAGAGATGAGTATAAAGGGAAAATGAGGGCAA
Canis lupus familiaris breed Labrador retriever chromosome 34a.
CP050605.1:17003711-17003725
TATAATATTCATTATAAATGCTGACACATA17003711AATGTTGTCAATGAAAAAAATTAAGTCCAAGACAAACTTGTAGCA
Canis lupus familiaris breed Labrador retriever chromosome 34b.
CP050608.1:16996217-16996231
TATAATATTCATTATAAATGCTGACACATA16996217AATGTTGTCAATGAAAAAAATTAAGTCCAAGACAAACTTGTAGCA
Canis lupus familiaris breed Labrador retriever chromosome 31b.
CP050617.1:21871205-21871219
TTAAAGTCATTGGTGTTTTCAGACGTTAAG21871205AATGTTGTCAATGAAATGTGGAGATGCTCCAGCCTTCCAGCTATT
Canis lupus familiaris breed Labrador retriever chromosome 14b.
CP050623.1:35510843-35510857
TGCCTTATTGCTAATCATGGCACCCTTTGG35510843AATGTTGTCAATGAATGTTAACAGAAGTAAAAGAAGATATTCAAA
Canis lupus familiaris breed Labrador retriever chromosome 04b.
CP050625.1:19434651-19434665
TTTTATATGCATTTCTGTTTCTTATGTTGT19434651AATGTTGTCAATGAAATTCATGAGAAAAATTTGAATGTGAGGTAG
Canis lupus familiaris breed Labrador retriever chromosome 04b.
CP050625.1:82102337-82102351
ATTCCCACTGACTAGGAATGTTTTCATTTA82102337AATGTTGTCAATGAAAACCAAATGTTAACACTAATCTCCTTTAAT
Canis lupus familiaris breed Labrador retriever chromosome 13b.
CP050644.1:8021489-8021503
ATTTTTAAAAATACATATAATACTCTCAAT8021489AATGTTGTCAATGAAGAGATGAGTATAAAGGGAAAATGAGGGCAA
Sus scrofa scrofa breed NS chromosome 2.
CP071553.1:109825955-109825969
GAGCAGTGGAAACGAGCTATGGATTATTTA109825955AATGTTGTCAATGAACTCAACTATATGACTCAGATCGTTATCATG
Sus scrofa scrofa breed NS chromosome 3.
CP071554.1:128269158-128269172
GTAGATGGGAACCTTAAAATAGCTATTACA128269158AATGTTGTCAATGAACTTGAGAATGTACAAGAAAACATAATGAGA
Sus scrofa scrofa breed NS chromosome 7.
CP071558.1:67678017-67678031
GGATAAGACCAAGCAGTATTACACTTCAAA67678017AATGTTGTCAATGAAACCATTAGCAAGTTTGTTGGAATATTCTTT
Sus scrofa scrofa breed NS chromosome 8.
CP071559.1:80967512-80967526
TTAATATTAATATTAAATGGATGCCCAGGG80967512AATGTTGTCAATGAAAATCTGTGTTTAAGAGATAATATATTCTAG
Sus scrofa scrofa breed NS chromosome 9.
CP071560.1:95061853-95061867
TAGGATATATTTTAGACTGAACATCTAGAA95061853AATGTTGTCAATGAAAAGCATTATGGCTTCAATAATTCTCCTGAT
Sus scrofa scrofa breed NS chromosome 11.
CP071562.1:29209236-29209250
GAAACAGAAACAATGAATAATTGGTTATGA29209236AATGTTGTCAATGAAAAGTACCTGTGATCACAGGCACAGGAAAAA
Sus scrofa scrofa breed NS chromosome 15.
CP071566.1:101323113-101323127
TGATAAGCAATGTTTATTTTTTGACTTCTG101323113AATGTTGTCAATGAATCGAAAGGGAAAGTTTAAAGATGTAAGACC
Sus scrofa scrofa breed NS chromosome 16.
CP071567.1:57889553-57889567
GAAGAGAGAGCCAGAAATAAACCTACACAT57889553AATGTTGTCAATGAATTTACAATAAAGAAGCCAAGATTATCCTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj134mam/AATGTTGTCAATGAA
lang : ja | db : ddbj134mam | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.138:50404/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.138 | 0.039 | search_minus_done; http://172.18.8.138:50404/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=0
0.138 | 0.000 | cgi_end;

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