GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 12:04:10, GGGenome : D. grimshawi genome, Agencourt prelim/droGri1 (Aug, 2005)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

scaffold_7154:925-939
TTGCGATGTGGCTCGACGGCTCTACCAAAT925TTCATTGACAACATTCGAATGGCTCTTGGCCAAACAAAGTGCATT
scaffold_24992:1870105-1870119
TTGCGATGTGGCTCGACGGCTCTACCAAAT1870105TTCATTGACAACATTCGAATGGCTCTTGGCCAAACAAAGTGCATT
scaffold_24997:2474412-2474426
TTAAAAGTGTTGTTAAATGTTGGATATATT2474412TTCATTGACAACATTGACAAGTTTATTGTAGTTGCCACTGTCCGC
scaffold_25041:2799309-2799323
CCGATAGTTCCTTAAAGAATTCAGCGTTAT2799309TTCATTGACAACATTCAATCAGGTGTCAAAAAGAGTTTTTCCAAC
scaffold_24895:175073-175087
TTAGTCAACTGCCATCAGCGGGCAAAGTTC175073AATGTTGTCAATGAATAATGCTTGATGGGCTTTTCTGTAGGTGGA
scaffold_25029:4930184-4930198
GATATTAAACATTGCTTAATATTGCTTAAT4930184AATGTTGTCAATGAAATGAAAGATCTTTCAAAACCACAACTAGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/droGri1/TTCATTGACAACATT
lang : en | db : droGri1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.76:28097/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.76:28097/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.089 | 0.001 | cgi_end;

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