GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

NOTICE:
nyaan

2025-05-16 03:11:50, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:369061-369075
AGGTTATGTAGGATTTTCTTTATAGATGAT369061TATGTTGTCAGTGAATAAAGACATTTGCTTTTAAAATTCTAGTAT
chr1:370280-370293
GTGTTGATTTCATATTTGGGTATTGTGAAT370280AATGCTG-CAATGAACATGAGCCTGGAGATATCTCTTCAGCATAT
chr1:811105-811119
AAAGCAGGTGAGGCCCCTTCTTGTTCTCTG811105AATGTTGTCAATGGTCTATTGCAGCCAAATGGGGACAGGCAGGCA
chr1:1930398-1930411
AAATAGCTCATGTTCAAGCACTACAAACTC1930398AATGTTGTCAG-GAAGTCAGTTCCTTCCAGATTGCTCTATAGATT
chr1:2170568-2170582
AAATTATACTACCAAGTTGAATGATATGCA2170568AATGTAGTCAATTAAGCGAGGGGATTTTAATTAGCAGTTTAAGTT
chr1:2224517-2224530
GGGAGAGCAGGGGTTGGCAGGAACCCGGCA2224517AAT-TTGTCAATAAACCTGAACCTGAAGTCCCACAAGGACGGAGG
chr1:3173685-3173699
TGGCCTGCAGCAAACACTCAGTAAGTGGCG3173685AAGGTAGTCAATGAACACTGGTAGTACCTGGCAGGCCGCGGAGGG
chr1:3358344-3358357
GAAACAGGGAAAAATCAACAGGAGAAAAAA3358344AATG-TGTCAATGAGGAATCTGTTTTCTGGGAAAAGAGATGCTTT
chr1:4417783-4417796
ATTCGTTATTGTTAATCTCTTGCTGTGTGT4417783AAT-TTGTCAATTAAACTGTATCATAGGTGGGTACATGTAGGGAA
chr1:4869854-4869867
ACCAGTCCATGTTCATGGATAGAAAGACTC4869854AATGTTGTCAA-GATGTCAGTTCTCCCCAACTTGATCTATAGATT
chr1:4873534-4873547
CTAGGGTTTACTCAGGGATGAGGTAGGTCT4873534AATGTT-TCAATCAATTAATATATTTCATCATATTAACAGAAAAA
chr1:4949703-4949718
TGCTTTGTAGAGGTTTCATCTCAGAATGCA4949703AATGTTGTCCTATGAATCCAAAGTATGATTATAGTGGGTAAAAAAA
chr1:4951550-4951563
AAAATTAGCTTTTAAAACCCAGAAATACTA4951550AATGTTGGCAA-GAAACTGGATCACCCAGAACTCAGCTATGTTGG
chr1:5089979-5089993
CATCCTCTGGGATACTGCTTACAAATTGGC5089979AAAGATGTCAATGAAAAATAATGACATTACTGGGCTCCTTCTCTC
chr1:5334936-5334950
GGTTTGTGCTCAGTTCCACCCCATCAGCTC5334936AATGTTGTCACAGAATCAAAGACATTTACATAACAACCCAGCATG
chr1:5666165-5666178
TCTTACAATAAAGTAAGCTAGAGAAAAGAA5666165AATGTTATCAA-GAACTCATGGGAAAGAGAACATATATTGACCAT
chr1:5788638-5788651
GGGCCGAGGGAGGGTACTACACGCAAGGCC5788638AATA-TGTCAATGAAGTACCCTGTGCTGTTCATTAAAACCTGAAA
chr1:5988105-5988119
AGCAGAAATCGCAATCTCTCTCGAGTTGTG5988105AATGTTGTCATTGACCTATGTGAAACTGACATCTTTATTCTGGGT
chr1:6068620-6068632
AGAATTGCTTGAACCCGGGTGGCGTGGTGG6068620AA-GTTG-CAATGAACCAAGATTGCACCGCTGCACTCCAGCCTGG
chr1:6716485-6716498
AAAAGATCATAAATAAAGATGATTTAGAAA6716485AATG-TGTCAAAGAAAACTGTTGTGAATAAAGTTAAAAAGACAAT
chr1:6757024-6757037
CCATTTGTCTTGGGAATAAATTAGGTTTGA6757024AATG-TGTCAATTAAATTTCCTAATTAATGGATCAGGTAAATTTA
chr1:6925807-6925821
AACTCTGTGAGGTAGGGATGTTACTGTTCT6925807CATGTTGTAAATGAAGAAAGTGAGACCTTAGTTGAAAAATTAAAT
chr1:7414581-7414594
GGTTGATTCTGTACCTTTGCTATTTTGCAT7414581AATGCTG-CAATGAACATGTGTCTTTGCGGTAGAATAATTTATTT
chr1:7636965-7636978
GACGGGGGATTGGCCATCACAGATACAGGG7636965AAT-TTGTTAATGAAGATCTGTCTTATGGCTCTGAAAGTGGAGAA
chr1:7839979-7839992
TTAAGTTCCAGAGTGCTATAATCTAGATGT7839979AATGTTGTCACT-AATTAATTGCCATTACTCCCAGTTAGTTACCC
chr1:7880906-7880919
CATATTTTGGACAGTATTTCTCAGTTATGT7880906TAT-TTGTCAATGAAATCAGTTGACACATATAAAGCACTTAATAC
chr1:7904969-7904982
GTGGTAATAAAAATTTATATTATAGGCTTC7904969AATGTTTTC-ATGAATGTTACCCAAAAAGCTGTGTTTTCTTTGGT
chr1:7964234-7964248
AAATTTTTATCTTATACCTGGCTTTTAAGG7964234AATG-TGTCTAATGAAAAGTAAAGATGGCCGAGCACATTATTGGCA
chr1:8431008-8431024
TTTTGCCTGCAAGCAAACACAGAGGTATAA8431008AATGTTGTCGACATGAATGGCCTATAATGATCATTTTGCTCCTGATG
chr1:8451354-8451368
ATACTTGGGTAAGTTACACAGCCTCCTATC8451354TATGTGGTCAATGAACCGATGTATGTAAAGCACTGAGAACAGTGC
chr1:8515537-8515551
AACCACACGTATCATCAGTACACATCAGGT8515537GATGTTGGCAATGAACGAGTTTTTTTAATTGGAATTTAGAAAATA
chr1:8600052-8600066
TACATACGGTTTCTGAAAGTCCTCTAGAAA8600052AATGTTCTCAATAAAATGATACCCATTTTGCCTTTACACTTAATG
chr1:8707582-8707594
ATCAATAAAACTACCCCACCACAAAATATG8707582AATGTT-TCAA-GAAGACACCTTCATTTGCATGTCACATCTATTA
chr1:8803716-8803730
CAGTATAGACATGCATAGTCTGATCAAGAA8803716AATCTTGTCAATAAAATGAAACTTAACAAGGGCCTTGGGGATATT
chr1:8861636-8861650
GTGTGAGCCACCGCGCCTGGCCAAAAAAAA8861636AATGTTCTTAATGAAAAGATATCATTGTACACATTTCCACCTATC
chr1:8876926-8876941
TGACTTCCTTCCCTTCCAGTTTCAGCCAAT8876926AATGTAGTCACATGAAATAGTTTAACCTCAAACAAGTAGAACAAGA
chr1:9221992-9222006
GGCCTTTTTCTCGGGTTGTAAATGTTCCCT9221992AAAGTTGTCAGTGAATTAAACCAGAAAAAAAAAGAAAGAAAGAAA
chr1:9288312-9288327
TTCATAACAGTAAAAAGCAGAAACAACCTA9288312AATGTTCATCAATGAATGGATCAACAAAATGTGGTGTATATCCATA
chr1:9575115-9575128
CAACTGAAACAGCTGAGTGATAAAAGAAAT9575115AATGTTG-CATTGAATAACAACTCAAAGGATAAAATAAATATCCA
chr1:10217857-10217869
CTGTCTCAAAAATAATAATAATAATAATAA10217857AAT-TTGTC-ATGAATTCTGAAATTTCTCATGCCTAAGCTTTTGC
chr1:10414689-10414701
TTTATGTTTTCATATTTCATTGATTTGCCT10414689AATGTT-T-AATGAAGTTAGATAATAATAATAAGTACAACTGGCA
chr1:10633659-10633672
TGGCGAAAATTTAAAAGGCTGAGAATAGCA10633659AATGTTGTCAA-GAATGTGGAGCAGCAGTAACCCTCATGCATTGA
chr1:10811606-10811620
CCAGCTTTGCTTTTAATGCCATTTGGGCTT10811606AATGTTGTTAATGAAATATAAATACCCACGCTAATGATGTTGGTC
chr1:11093723-11093737
CTCCGTCTCCAAAAAGAAAAAAAAGAAAAA11093723AATATTGTCAAAGAACACACTTTGGAAGCCTGAGGCGGGCAGATC
chr1:11316172-11316186
GGCCTGTTTGGGGTCCCACACGGCCACAAA11316172AATGTTGTCAAAGAAGGGTTGCACTTGCTGGAAGAAGAAGGTAGG
chr1:11402228-11402241
CCAACCTGGCAGCTTCATCTTCATTTTGTA11402228AATGTTG-CAATGAAACTCCAGGAGGTTCTGTGCTTGCTGGAGGC
chr1:11567951-11567964
AGAAGATACTCTATAAATGCTTTTCAAATT11567951AATG-TGTGAATGAATAAATGATTGATTTTCTACTCTAACAAAAG
chr1:11609465-11609477
ACACAGCAGCATGGATGAATCTGAAGACAT11609465AATGTTG--AATGAAAGAAGTCAAACTTAGAAGACTGCATATGGA
chr1:11612125-11612139
AAAAGATGGGAAGGAGGCCAGTATGGATGG11612125AATGTAGTGAATGAAGGGAAGATGGAAGGGAAATAAAGTTGGAGA
chr1:12046993-12047008
GACTTTGGAGTCAAGTCTCATGACCTCTAA12046993AATGTTGTTATATGAAAAGATAAGCTACAAAGATATGTAGGATTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/hg19/2/AATGTTGTCAATGAA
lang : en | db : hg19 | k : 2 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.084 | 0.074 | search_plus_done; http://172.18.8.138:28018/match?q=AATGTTGTCAATGAA&k=2&no_gap=0&offset=0&limit=50
0.103 | 0.019 | search_minus_done; http://172.18.8.138:28018/match?q=TTCATTGACAACATT&k=2&no_gap=0&offset=0&limit=0
0.103 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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