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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-01 12:39:06, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:18479-18485
GAGCTGCCAGGCCAGGCCCTCAGGCAAGGG18479CTCTGAAGTCAGGGTCACCTACTTGCCAGGGCCGATC
chr1:21288-21294
CTATCTGTCACCATTTCCTGTCGTCGTTTC21288CTCTGAATGTCTCACCCTGCCCTCCCTGCTTGCAAGT
chr1:25915-25921
AAAATGCTGTGACCTTGAGTAAGTTGCCGT25915CTCTGAATCTGATCCTTTCGATTTCCCATTCTCCAAA
chr1:35014-35020
GAATAGACAAGACCACAAGCAGCTTGGTGC35014CTCTGAAAGGGAGAGGGGTGGAGGGGAGACTAGAGAG
chr1:41732-41738
AGTATAACATGTTAAAGCACAGAGCCCCAA41732CTCTGAAAAGTACCATCCCTAAATTGGCATTTAGTTG
chr1:56970-56976
CTTTTATATTTGTATATGTTTTTCCAATAC56970CTCTGAAAAAACTGATCCAAAAAAAATACAAATTTTA
chr1:57973-57979
TCTCCAATTAATTATAAACTTCATTTTCCA57973CTCTGAAAAGGAGATGTCTGATCTCAGCTATTTCCAT
chr1:60954-60960
TTCCCACTTCATCATTACTAACCTCACTCA60954CTCTGAACTTGATGAGAGCACCTGAGCATTAATTTTT
chr1:75039-75045
TCCCAAGCCTAAACCAGGAAGAAGTTGAAT75039CTCTGAATAGACCAATAACAGAAGCTGAAATTGTGGC
chr1:102315-102321
AGAAGCAAAGCCACTGAAAGATGAACAGGG102315CTCTGAAAGAGATGCTTGACTGCTATCTTTTCAAATG
chr1:123308-123314
TTGAAAAATTTTAGATAAATATCAAACTTT123308CTCTGAAACTGTAACTGTAAAATGTAAAAAACAGTAA
chr1:131991-131997
GACGGGCACTGCCACTGCCCCTGGGGTGTC131991CTCTGAACTCCTGTCAGTTGCAGCCCAAACACTCCAG
chr1:145748-145754
TTGAACGCACACTCTTTCTCCTCTGGGAGT145748CTCTGAAGTGGGTAATATCCTCTGCTTATAATATGCT
chr1:149071-149077
TGTAGCCTAAGCAACAGAGCAAGACGCTGT149071CTCTGAAAAGGAAAGAAAACAAATGCAAGTTTTTATC
chr1:154179-154185
ATAATTTCTTAGGCCTGTCATTACTGCAAT154179CTCTGAACATAAATTGTGAAGATTTCATGGACACTTA
chr1:154561-154567
GAGAAAGAGAATGCATCCCTAAGGGGAGGC154561CTCTGAAATGGCCGCTTTGGGGACGGCTGTCTTTTAC
chr1:161621-161627
AGGGAAGGTTACTAGGTCACTAACTTACTA161621CTCTGAAAAGTGACTTAAGATGAGAGGTAGGGTGGAA
chr1:168164-168170
ACGTAGATCAGCGATACGATGATTCCATTT168164CTCTGAAAACCAAGCAAAAGTTGCTTCTCAATAACAC
chr1:248631-248637
AGAAGCAAAGCCACTGAAAGATGAACAGGG248631CTCTGAAAGAGATGCTTGATTGCTATCTTTTCAAATG
chr1:319016-319022
CCTGGTCTCAAGTGATCCTCCCACCTCAGC319016CTCTGAAAGTGCTGGGATTACAGATGTGAGCCACCAC
chr1:321250-321256
CAGCTCCTGCCTCCCAGCCTTCTCTCCAGG321250CTCTGAACTTTCTCAGTAAGTTCAGGTAGCTGGGACT
chr1:328866-328872
AGCAGGAGCTATTTTCCGAAAAGTGAAAAG328866CTCTGAAGGTCCCACAATTCATGGTATGTACAGGGGC
chr1:334245-334251
AATCATAGATTTTTATAAAATGAAAGCTGC334245CTCTGAAGCACTGCAGACTCAGCTGAGCACCGATACA
chr1:352803-352809
GACCTTCACCAGAGCAGTCTGACAGAACCT352803CTCTGAAAGACTTCTCCTAGGCTGTAATCCTCAGTCT
chr1:390168-390174
ACTCTCAAATCTGTATGGAATCACAAAAAA390168CTCTGAAAAGCCAAAATAATCTTGATCGAAAAAAGCA
chr1:396870-396876
GAATATTAGATACTTCTTAATTTATCTTTG396870CTCTGAATTTGTTTTTTTTCACTCGTTGTATACTCAT
chr1:397626-397632
ACAAGTGATTTCTGGCTGGCAATGCCAGGT397626CTCTGAAGTTCCACTTGGCCACTGCCCAAGAACAATT
chr1:418117-418123
TGCAGGGAAGGAGCTGAGCGTGGATCTTGA418117CTCTGAATTGGCTGGGACATGCAAAATCGGGGGCATG
chr1:419746-419752
AAACTCGTTATTACAAAAGAATCACTTTGT419746CTCTGAAGTGGGCAATTCAACCCATTTCTAGGAGATT
chr1:426812-426818
CCTTAGATCCAATTCCATTGGTTCCCATAG426812CTCTGAAGTGGAGAGATGCTAGTAATAAATCCTACAG
chr1:428990-428996
GATTAAAAGTGTATAAAGATGCTCTGCAAG428990CTCTGAAGTATTAGCCAACCGTCTAGTCAGTGTGAAG
chr1:434050-434056
CAAATGTAATTAGATGAGAGAAAAACAAAG434050CTCTGAAACCCTAATTAGGTGCCAAGCCCTCAGGCTT
chr1:456030-456036
TGATCTCTCTCCCTGAACGGCTAAACCACA456030CTCTGAATAGAAAACTGTCTTGAAAACTGCTTTGCAC
chr1:531042-531048
GGCTGCCCAACAGTCCATCCCCTCTTCTCT531042CTCTGAAATCAAGAAACATTCCGAATTCCAAAATGCA
chr1:550625-550631
GGGAAGAGCCTCTGTCCAGGAGGCATTGCT550625CTCTGAAAATCTGTCTCAGCCCAACAACAGGTGCGAG
chr1:554974-554980
GCTGACTTCTGATTAGGGCATTTCATCCTT554974CTCTGAAATGCAGCTGAGAACTGGTCAGCCTCACTCC
chr1:559299-559305
ATGGCCCCTTCCTGGTCTCTGCAGTCAGCC559299CTCTGAAGCTGCTCAGCTGAACCCCTGGGAGCTGAGG
chr1:563202-563208
TTCCTTATTTCCAAGATTGGTCACCTCCTG563202CTCTGAAATAGCAATTGATTTTCAGACATGAGTTGAT
chr1:568724-568730
TACACGACCAGGGGTATACTACGGCCAATG568724CTCTGAAATCTGTGGAGCAAACCAGTTTTATGCCCAT
chr1:583858-583864
AGAAGCAAAGCCACTGAAAGATGAACAGGG583858CTCTGAAAGAAATGCTTGATTGCTATCTTTTCAAATG
chr1:610955-610961
GGTGTTCTGTTCCCTGTAAATAGAGATGTA610955CTCTGAACCTTTCTGCCTCCCTCAGCTGTTCCTAGTC
chr1:612063-612069
CTCTAGATTTCTCCTCTCTGGGCAAGGCAT612063CTCTGAAAAAAGGGCAGCAGCCCCAGTCAGAGACCTA
chr1:612200-612206
GACTTAAAGCATCTTTGAAAAGCCTGATGG612200CTCTGAAGAGAGCAGCAGATCTCCCTGCACAGTATTC
chr1:617807-617813
GTTAACTGATCAAATGGATGAATCCTGACC617807CTCTGAAGTCTCTTTCCTGAGTTAGAGCAGGGAACTG
chr1:630513-630519
CAAGACTGAACACCAAGATAAAGTGCATGC630513CTCTGAAGAGCTTGAGCTAGTCAAGAAGCCCAGAAAT
chr1:631185-631191
TAAAAATATGCCTTCTCTAAAATGTTTTCT631185CTCTGAAATGATATTTAGAAGACATAATTGAAAATAA
chr1:632551-632557
ACAAATGTAAAATTGCAACCATAAAAATTA632551CTCTGAAATACAATGAAAATTACTATAAGAGAGGGAT
chr1:634873-634879
TGTCTGGAGATCCAGGCATTTCCATACATT634873CTCTGAAATCTAGGTGGAGGTTCCCATACCTCGATTC
chr1:634974-634980
TGGAAGCTGCCAAAGCTTGAGGCTTGCACC634974CTCTGAAGCCATGGCCTGAGCTGTACCTTGACCCCTT
chr1:649645-649651
TTGAAAAATTTTAGATAAATATCAAACTTT649645CTCTGAAACTGTAACTGTAAAATGTAAAAAACAGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/hg19/CTCTGAA
lang : en | db : hg19 | k : 0 | strand : | nogap : | query_string : CTCTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.952 | 0.943 | search_plus_done; http://172.18.8.78:28018/match?q=CTCTGAA&k=0&no_gap=0&offset=0&limit=50
1.835 | 0.883 | search_minus_done; http://172.18.8.78:28018/match?q=TTCAGAG&k=0&no_gap=0&offset=0&limit=0
1.835 | 0.000 | cgi_end;

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