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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-01 12:46:07, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:10529-10535
GGTCTGACCTGAGGAGAACTGTGCTCCGCC10529TTCAGAGTACCACCGAAATCTGTGCAGAGGACAACGC
chr1:25149-25155
ACTGGGGAATCTGTAGGGTCAATGGAGGAG25149TTCAGAGAAGGTGCAACATTTCTGACCCCCTACAAGG
chr1:32657-32663
AGTTTTCATAAACACCCATCGGTGACTGTG32657TTCAGAGTGAGTTCACACCATCCTGACCTGCCCTGAG
chr1:62467-62473
GATCATTATAGGCACATGTAGGAAACAGCT62467TTCAGAGATGCCTTAACCGTAATTATGCATTTGTATT
chr1:62921-62927
AAGTTGATTCCTTCGTTTCTTTCAGGTTGC62921TTCAGAGTCTTCCCTTCTATCTGATTCAGTGGACCAA
chr1:67377-67383
GCTTTGAGTGTGTAGGACTAAGAAATGGGA67377TTCAGAGTAGTAAAGAGAAAAGTGGAATTTCCAAGCA
chr1:73033-73039
TTGGGGTTTTCTTTCTAATTTCATTATAGG73033TTCAGAGGGTACATGTGCAGGTTTGAGACAAAGGTAT
chr1:87514-87520
TTTCTGTAAAACATAAAAATCACCTGGACC87514TTCAGAGATGAGTTTGTTTATTTTTTTATTTTTTAAA
chr1:129101-129107
TGTATCGGTGCTCAGCTGAGTCTGCAGTGC129101TTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATT
chr1:134482-134488
GCCCCTGTACATACCATGAATTGTGGGACC134482TTCAGAGCTTTTCACTTTTCGGAAAATAGCTCCTGCT
chr1:141706-141712
GTGGTGGCTCACATCTGTAATCCCAGCACT141706TTCAGAGGCTGAGGTGGGAGGATCACTTGAGACCAGG
chr1:143928-143934
GCATTTGAAAGGAACCAACCCACGCCATTC143928TTCAGAGTCATCTTTACTGCTGCAGTGGTCAACTTGT
chr1:163656-163662
AATGTCTGCCAAAGAAATGGGGAAAAAAGA163656TTCAGAGAGTGAAAACAATTAATATACTAACAAGAGA
chr1:172524-172530
CCAGGCCCAGAGTGTTCTTTTGTCACTGTG172524TTCAGAGGGCAGCAGCTGCTGTGATGTACCCACCTGA
chr1:331353-331359
CTGGAGTGTTTGGGCTGCAACTGACAGGAG331353TTCAGAGGACACCCCAGGGGCAGTGGCCGTGCCCGTC
chr1:340012-340018
TTACTGTTTTTTACATTTTACAGTTACAGT340012TTCAGAGAAAGTTTGATATTTATCTAAAATTTTTCAA
chr1:354713-354719
AAGGGGTCAAGGTACAGCTCAGGCCATGGC354713TTCAGAGGGTGCAAGCCTCAAGCTTTGGCAGCTTCCA
chr1:354814-354820
GAATCGAGGTATGGGAACCTCCATCTAGAT354814TTCAGAGAATGTATGGAAATGCCTGGATCTCCAGACA
chr1:357131-357137
ATCCCTCTCTTATAGTAATTTTCATTGTAT357131TTCAGAGTAATTTTTATGGTTGCAATTTTACATTTGT
chr1:358497-358503
TTATTTTCAATTATGTCTTCTAAATATCAT358497TTCAGAGAGAAAACATTTTAGAGAAGGCATATTTTTA
chr1:359169-359175
ATTTCTGGGCTTCTTGACTAGCTCAAGCTC359169TTCAGAGGCATGCACTTTATCTTGGTGTTCAGTCTTG
chr1:371880-371886
CAGTTCCCTGCTCTAACTCAGGAAAGAGAC371880TTCAGAGGGTCAGGATTCATCCATTTGATCAGTTAAC
chr1:377487-377493
GAATACTGTGCTGGGAGATCTGCTGCTCTC377487TTCAGAGCCATCAGGCTTTTCAAAGATGCTTTAAGTC
chr1:377624-377630
TAGGTCTCTGACTGGGGCTGCTGCCCTTTT377624TTCAGAGATGCCTTGCCCAGAGAGGAGAAATCTAGAG
chr1:378732-378738
GACTAGGAACAGCTGAGGGAGGCAGAAAGG378732TTCAGAGTACATCTCTATTTACAGGGAACAGAACACC
chr1:406608-406614
CATTTGAAAAGATAGCAATCAAGCATTTCT406608TTCAGAGCCCTGTTCATCTTTCAGTGGCTTTGCTTCT
chr1:421391-421397
ATCAACTCATGTCTGAAAATCAATTGCTAT421391TTCAGAGCAGGAGGTGACCAATCTTGGAAATAAGGAA
chr1:425304-425310
CCTCAGCTCCCAGGGGTTCAGCTGAGCAGC425304TTCAGAGGGCTGACTGCAGAGACCAGGAAGGGGCCAT
chr1:429627-429633
GGAGTGAGGCTGACCAGTTCTCAGCTGCAT429627TTCAGAGAAGGATGAAATGCCCTAATCAGAAGTCAGC
chr1:433976-433982
CTCGCACCTGTTGTTGGGCTGAGACAGATT433976TTCAGAGAGCAATGCCTCCTGGACAGAGGCTCTTCCC
chr1:452733-452739
TGCATTTTGGAATTTGGAATGTTTCTTGAT452733TTCAGAGAGAGAAGAGGGGATGGACTGTTGGGCAGCC
chr1:527745-527751
GTGCAAAGCAGTTTTCAAGACAGTTTTCTA527745TTCAGAGTGTGGTTTAGCCGTTCAGGGAGAGAGATCA
chr1:550551-550557
AAGCCTGAGGGCTTGGCACCTAATTAGGGT550551TTCAGAGCTTTGTTTTTCTCTCATCTAATTACATTTG
chr1:555611-555617
CTTCACACTGACTAGACGGTTGGCTAATAC555611TTCAGAGCTTGCAGAGCATCTTTATACACTTTTAATC
chr1:557789-557795
CTGTAGGATTTATTACTAGCATCTCTCCAC557789TTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGG
chr1:570717-570723
AATCTCCTAGAAATGGGTTGAATTGCCCAC570717TTCAGAGACAAAGTGATTCTTTTGTAATAACGAGTTT
chr1:572347-572353
CGTGCCCCCAATTTTGCATGCCCCAGCCAA572347TTCAGAGTCAAGATCCACGCTCAGCTCCTTCCCTGCA
chr1:592826-592832
AATTGTTCTTGGGCAGTGGCCAAGTGGAAC592826TTCAGAGACCTGGCATTGCCAGCCAGAAATCACTTGT
chr1:593582-593588
ATGAGTATACAACGAGTGAAAAAAAACAAA593582TTCAGAGCAAAGATAAATTAAGAAGTATCTAATATTC
chr1:600284-600290
TGCTTTTTTTGATCAAGATTATTTTGGCTT600284TTCAGAGTTTTTTGTGATTCCATACAGATTTGAGAGT
chr1:655458-655464
TGTATCGGTGCTCAGCTGAGTCTGCAGTGC655458TTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATT
chr1:660848-660854
GCCCCTGTACATACCATGAATTGTGGGACC660848TTCAGAGCTTTTCACTTTTCGGAAAATAGCTCCTGCT
chr1:671775-671781
AGTCCCAGCTACCTGAACTTACTGAGAAAG671775TTCAGAGCCTGGAGAGAAGGCTGGGAGGCAGGAGCTG
chr1:677425-677431
GTGGTGGCTCACATCTGTAATCCCAGCACT677425TTCAGAGGCTGAGGTGGGAGGATCACTTGAGACCAGG
chr1:679647-679653
GCATTTGAAAGGAACCATCCCACGCCATTC679647TTCAGAGTCATCTTTACTGCTGCAGTGGTCAACTTGT
chr1:699496-699502
AATGTCTGCCAAAGAAATGGGGAAAAAAGA699496TTCAGAGAGTGAAAACAATTAATATACTAACAAGAGA
chr1:708323-708329
CCAGGCCCAGAGTGTTCTTTTGTCACTGTG708323TTCAGAGGGCAGCAGCTGCTGTGATGTACCCACCTGA
chr1:720738-720744
GCATTATATCAGCCACTTATCAACAAACAT720738TTCAGAGAAAAATAGTTCCTTGTATTGTTATTGCAAT
chr1:728654-728660
GTTTACCCATTGGGAGGTTCTTGCTTCATC728654TTCAGAGTTTAATAATTCCTGTAGGATATGGCACACT
chr1:729615-729621
GCAGTGATGGTCACCTTCTCTAACAGGCAT729615TTCAGAGTGAGGTGGGACGTTCTAGGGCACCTGTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/hg19/TTCAGAG
lang : en | db : hg19 | k : 0 | strand : | nogap : | query_string : TTCAGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.945 | 0.937 | search_plus_done; http://172.18.8.78:28018/match?q=TTCAGAG&k=0&no_gap=0&offset=0&limit=50
1.829 | 0.883 | search_minus_done; http://172.18.8.78:28018/match?q=CTCTGAA&k=0&no_gap=0&offset=0&limit=0
1.829 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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