GGGenome | Results

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2025-04-09 04:01:26, GGGenome : Human genome, GRCh38/hg38.p12 (Dec, 2017)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1
position: 82996793-82996807

CTAATTAATGAATAGTAAGTATATTTTCTC82996793TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT

chr2
position: 160366604-160366618

ATTGCAGCAAAGAAGCACATTTATATTCTA160366604TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT

chr3
position: 15248283-15248297

ATTGTAATAGCCAGAAATTGGAAACATATA15248283TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

chr3
position: 84570694-84570708

TTGGTTTTGTATATATTAAATAGTTGAAAC84570694TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA

chr4
position: 16133028-16133042

AACGAAAGGCGTTTGAGGAAAGCCTGATAA16133028TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA

chr4
position: 62165422-62165436

TCTTCAAATATTTTACAGAGTTCAACTCTT62165422TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT

chr4
position: 148912066-148912080

CAGAATATATTATCGCTTTAAACACAGATT148912066TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA

chr4
position: 165800998-165801012

AAAAACGTCTGATTTTGTGTAACACTCCTT165800998TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT

chr6
position: 61998311-61998325

CTATTTCAATCAACCATCTTGTAATCATAC61998311TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT

chr7
position: 3524041-3524055

GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3524041TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA

chr8
position: 31498629-31498643

GTATTTTTAAATTCATCGATATTTCCACTT31498629TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA

chr11
position: 24472484-24472498

TTGAGTTTCCTGGAACATAGATATGTCTTG24472484TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG

chr13
position: 84191412-84191426

GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84191412TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC

chr18
position: 29571724-29571738

ATATTTATATATGTATATATTTCATATTAT29571724TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA

chr19
position: 41061361-41061375

AAGCCACCACACCCGGCCTATCTTAGCTTT41061361TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG

chr2
position: 196213136-196213150

AATGCCCCACATTTCATTAAGGGTGATGAC196213136AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA

chr3
position: 57200491-57200505

GCCTGTTTTTCATATGCATATGTAATAGGG57200491AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT

chr3
position: 97360478-97360492

AATTTGAATATTAATTTTAAAATTTATTCA97360478AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA

chr5
position: 9759391-9759405

GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9759391AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG

chr7
position: 34118949-34118963

TCTACAGATTTTGGATTTACCAGCCCCCAC34118949AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC

chr7
position: 78722088-78722102

AACTAACACCCATAAAAGGTATGACTCTTT78722088AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA

chr12
position: 79107514-79107528

ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79107514AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG

chr19
position: 40892287-40892301

CTCCCTTAGGAGAGCTGTTAACATTATACT40892287AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.75:28820/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.097 | 0.015 | search_minus_done; http://172.18.8.75:28820/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=35
0.103 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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