GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-24 03:36:27, GGGenome : Human genome, GRCh38/hg38.p14, D3G 23.02 (Feb, 2023)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr1
position: 82996793-82996807
CTAATTAATGAATAGTAAGTATATTTTCTC82996793TTCATTGACAACATTTTTCCTCTTACTTTATTGTAAGAATACAAT
chr2
position: 160366604-160366618
ATTGCAGCAAAGAAGCACATTTATATTCTA160366604TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3
position: 15248283-15248297
ATTGTAATAGCCAGAAATTGGAAACATATA15248283TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC
chr3
position: 84570694-84570708
TTGGTTTTGTATATATTAAATAGTTGAAAC84570694TTCATTGACAACATTAAGTTTGTTTTCTAGGCTCTATTGGGATAA
chr4
position: 16133028-16133042
AACGAAAGGCGTTTGAGGAAAGCCTGATAA16133028TTCATTGACAACATTACCATCAACCACACCTTACCATTCCTAGGA
chr4
position: 62165422-62165436
TCTTCAAATATTTTACAGAGTTCAACTCTT62165422TTCATTGACAACATTATGACATTATGCTGATTGGATCCAGTGAGT
chr4
position: 148912066-148912080
CAGAATATATTATCGCTTTAAACACAGATT148912066TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4
position: 165800998-165801012
AAAAACGTCTGATTTTGTGTAACACTCCTT165800998TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6
position: 61998311-61998325
CTATTTCAATCAACCATCTTGTAATCATAC61998311TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7
position: 3524041-3524055
GTGGTGCCTGGCCTGAGTCAGCTCATTAGC3524041TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA
chr8
position: 31498629-31498643
GTATTTTTAAATTCATCGATATTTCCACTT31498629TTCATTGACAACATTATTAAGTTTTATTGTGTCTCTTTTTTCAAA
chr11
position: 24472484-24472498
TTGAGTTTCCTGGAACATAGATATGTCTTG24472484TTCATTGACAACATTCTAGCATTGAGGACAGTGAATAGAGAAAAG
chr13
position: 84191412-84191426
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA84191412TTCATTGACAACATTTCCTGAGGTAACTCACACTGAGGTGACAAC
chr18
position: 29571724-29571738
ATATTTATATATGTATATATTTCATATTAT29571724TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19
position: 41061361-41061375
AAGCCACCACACCCGGCCTATCTTAGCTTT41061361TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2
position: 196213136-196213150
AATGCCCCACATTTCATTAAGGGTGATGAC196213136AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3
position: 57200491-57200505
GCCTGTTTTTCATATGCATATGTAATAGGG57200491AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr3
position: 97360478-97360492
AATTTGAATATTAATTTTAAAATTTATTCA97360478AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA
chr5
position: 9759391-9759405
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC9759391AATGTTGTCAATGAAAGATCAACAGATCAGTGCATTATACCCAGG
chr7
position: 34118949-34118963
TCTACAGATTTTGGATTTACCAGCCCCCAC34118949AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7
position: 78722088-78722102
AACTAACACCCATAAAAGGTATGACTCTTT78722088AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12
position: 79107514-79107528
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA79107514AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr19
position: 40892287-40892301
CTCCCTTAGGAGAGCTGTTAACATTATACT40892287AATGTTGTCAATGAAAAAGCTAAGATAGGCCAGGCATGGTGGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hg38.p14_d3g2302/TTCATTGACAACATT
lang : ja | db : hg38.p14_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.090 | 0.080 | search_plus_done; http://172.18.8.78:28937/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.106 | 0.016 | search_minus_done; http://172.18.8.78:28937/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=35
0.112 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).