GGGenome | Results

データベース：

ミスマッチ/ギャップを許容ミスマッチのみ許容：塩基まで (検索する配列長の25%まで)
双方向を検索＋方向のみ検索－方向のみ検索

2024-11-05 13:23:37, GGGenome : Human pre-spliced RNA, RefSeq curated protein coding on GRCh38/hg38.p14, D3G 23.02 (Feb, 2023)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

NM_001301128.2|MAGI2;9863|chr7:78017054:79453667:-|prespliced::chr7:78017054-79453667(-)
position: 731566-731580

TATATTTGTTATAGAATATTATGTTAAATC731566TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT

NM_001304840.3|HECW2;57520|chr2:196194071:196362177:-|prespliced::chr2:196194071-196362177(-)
position: 149028-149042

TGACAGTATAGTTATATGAGAAGCAACTTC149028TTCATTGACAACATTGTCATCACCCTTAATGAAATGTGGGGCATT

NM_001348768.2|HECW2;57520|chr2:196194071:196593554:-|prespliced::chr2:196194071-196593554(-)
position: 380405-380419

TGACAGTATAGTTATATGAGAAGCAACTTC380405TTCATTGACAACATTGTCATCACCCTTAATGAAATGTGGGGCATT

NM_001376058.1|HESX1;8820|chr3:57197837:57227615:-|prespliced::chr3:57197837-57227615(-)
position: 27111-27125

ACTATGCTGCACTCCAAATACTATTGTGTT27111TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC

NM_001376059.1|HESX1;8820|chr3:57197837:57227615:-|prespliced::chr3:57197837-57227615(-)
position: 27111-27125

ACTATGCTGCACTCCAAATACTATTGTGTT27111TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC

NM_001376060.1|HESX1;8820|chr3:57197837:57227615:-|prespliced::chr3:57197837-57227615(-)
position: 27111-27125

ACTATGCTGCACTCCAAATACTATTGTGTT27111TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC

NM_001376061.1|HESX1;8820|chr3:57197837:57227615:-|prespliced::chr3:57197837-57227615(-)
position: 27111-27125

ACTATGCTGCACTCCAAATACTATTGTGTT27111TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC

NM_001376086.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001376087.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001376089.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001376090.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001376091.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001376093.1|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_001386348.1|TAS2R1;50834|chr5:9627346:9903876:-|prespliced::chr5:9627346-9903876(-)
position: 144472-144486

CCTGGGTATAATGCACTGATCTGTTGATCT144472TTCATTGACAACATTGCCATCGACTTTGGAGCTGGAAAGGCCCTC

NM_012301.4|MAGI2;9863|chr7:78017054:79453667:-|prespliced::chr7:78017054-79453667(-)
position: 731566-731580

TATATTTGTTATAGAATATTATGTTAAATC731566TTCATTGACAACATTAAAGAGTCATACCTTTTATGGGTGTTAGTT

NM_014296.3|CAPN7;23473|chr3:15206245:15252916:+|prespliced::chr3:15206245-15252916(+)
position: 42038-42052

ATTGTAATAGCCAGAAATTGGAAACATATA42038TTCATTGACAACATTTAAGATTATAATATAGTCATATAATAGTCC

NM_020760.4|HECW2;57520|chr2:196194071:196592983:-|prespliced::chr2:196194071-196592983(-)
position: 379834-379848

TGACAGTATAGTTATATGAGAAGCAACTTC379834TTCATTGACAACATTGTCATCACCCTTAATGAAATGTGGGGCATT

NM_152744.4|SDK1;221935|chr7:3301251:4269000:+|prespliced::chr7:3301251-4269000(+)
position: 222790-222804

GTGGTGCCTGGCCTGAGTCAGCTCATTAGC222790TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA

NM_001080448.3|EPHA6;285220|chr3:96814593:97761532:+|prespliced::chr3:96814593-97761532(+)
position: 545885-545899

AATTTGAATATTAATTTTAAAATTTATTCA545885AATGTTGTCAATGAACATTGTCAGACATTTTGCAGCATTTCTTTA

NM_001135805.2|SYT1;6857|chr12:78863981:79452008:+|prespliced::chr12:78863981-79452008(+)
position: 243533-243547

ATAAGATAGGTTTGTTCCAGAAGTTTAAAA243533AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG

NM_001135806.2|SYT1;6857|chr12:79045691:79452008:+|prespliced::chr12:79045691-79452008(+)
position: 61823-61837

ATAAGATAGGTTTGTTCCAGAAGTTTAAAA61823AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG

NM_001291901.2|SYT1;6857|chr12:78864773:79452008:+|prespliced::chr12:78864773-79452008(+)
position: 242741-242755

ATAAGATAGGTTTGTTCCAGAAGTTTAAAA242741AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG

NM_001350622.2|KHDRBS2;202559|chr6:61679960:62286225:-|prespliced::chr6:61679960-62286225(-)
position: 287901-287915

AGAAATAGCAACTTATTATAGTATGAGTAA287901AATGTTGTCAATGAAGTATGATTACAAGATGGTTGATTGAAATAG

NM_001365308.1|BMPER;168667|chr7:33905538:34156427:+|prespliced::chr7:33905538-34156427(+)
position: 213411-213425

TCTACAGATTTTGGATTTACCAGCCCCCAC213411AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC

NM_002897.5|RBMS1;5937|chr2:160272150:160493807:-|prespliced::chr2:160272150-160493807(-)
position: 127190-127204

AAGTTCCAAAGTAAATTTGCATTATATGCT127190AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT

NM_005639.3|SYT1;6857|chr12:78864773:79452008:+|prespliced::chr12:78864773-79452008(+)
position: 242741-242755

ATAAGATAGGTTTGTTCCAGAAGTTTAAAA242741AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG

NM_016836.4|RBMS1;5937|chr2:160272150:160493807:-|prespliced::chr2:160272150-160493807(-)
position: 127190-127204

AAGTTCCAAAGTAAATTTGCATTATATGCT127190AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT

NM_133468.5|BMPER;168667|chr7:33904914:34156427:+|prespliced::chr7:33904914-34156427(+)
position: 214035-214049

TCTACAGATTTTGGATTTACCAGCCCCCAC214035AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC

NM_152688.4|KHDRBS2;202559|chr6:61679960:62286225:-|prespliced::chr6:61679960-62286225(-)
position: 287901-287915

AGAAATAGCAACTTATTATAGTATGAGTAA287901AATGTTGTCAATGAAGTATGATTACAAGATGGTTGATTGAAATAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/hg38_RefSeqCuratedProtCoding_prespliced_d3g2302/TTCATTGACAACATT
lang : ja | db : hg38_RefSeqCuratedProtCoding_prespliced_d3g2302 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28935/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.102 | 0.018 | search_minus_done; http://172.18.8.78:28935/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=32
0.111 | 0.009 | cgi_end;

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