GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 04:37:16, GGGenome : Crab-eating macaque spliced RNA, TRaC 21.01 protein coding on macFasRKS1912, D3G 21.01 (Jan, 2021)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TRaC2101L117d2;na|SYT1|chr11:75970781:76007718:+|spliced::chr11:75970781-76007718(+)
position: 26529-26543
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA26529AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
TRaC2101L117d3;na|SYT1|chr11:75974271:76007718:+|spliced::chr11:75974271-76007718(+)
position: 23039-23053
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA23039AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/macFasRKS1912_Trac2101ProtCoding_spliced_d3g2101/TTCATTGACAACATT
lang : en | db : macFasRKS1912_Trac2101ProtCoding_spliced_d3g2101 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.75:28863/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.004 | search_minus_done; http://172.18.8.75:28863/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.002 | cgi_end;

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