GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-19 09:13:34, GGGenome : Crab-eating macaque genome, CE_1.0 (Jul, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2
position: 80004272-80004286
ACTATGCTGCACTCCAAATACTATTGTGTT80004272TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5
position: 143786337-143786351
CAGAATATATTATCGCTTTGAACACAGATT143786337TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5
position: 160911052-160911066
TAAAACCTCTGATTTTGTGTAACACTCCTT160911052TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr5
position: 176594540-176594554
TTTGGACCCCCAGATCAGTCTTCATATTCT176594540TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
chr12
position: 104260694-104260708
GCCTGAGCCACCATGCCCAGCTTGCTATTC104260694TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
chr16
position: 14305595-14305609
GCCTCTGGGCCTATATTAGATGGGCCATGC14305595TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17
position: 48176872-48176886
TGTTCAAAGTTTTCCCCTCCAATGTATCTT48176872TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
chr17
position: 65446857-65446871
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA65446857TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
scaffold144
position: 11414-11428
GTTCCAAGAAACTGCTCTCTAGGAGGTGCA11414TTCATTGACAACATTTCCAAGGAACTCCTTTGTGACGTGTGAGTG
chr11
position: 77243946-77243960
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA77243946AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
chr14
position: 47423552-47423566
GTTTGCTCTATTCACTGTCCTCAACGCTAG47423552AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/en/macaque_CE_1/TTCATTGACAACATT
lang : en | db : macaque_CE_1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.77:28229/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.091 | 0.010 | search_minus_done; http://172.18.8.77:28229/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=41
0.092 | 0.001 | cgi_end;

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