GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 08:31:08, GGGenome : Chinese pangolin genome, M_pentadactyla-1.1.1/manPen1 (Aug, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KN006821:140348-140362
TTTGGCTTAATATTAAATGGATGCCCACAG140348AATGTTGTCAATGAAAATCTGTGTTTAAAGTGATAATATATTCTA
KN008034:53809-53823
GAACAGTGGAAACGAGCTATGGATTATTTA53809AATGTTGTCAATGAACTCAATTACATGACTCAGATTGTTATCATG
KN008710:19792-19806
TCTGTGGTGTGCATAAGCTGGTACTTCAGA19792AATGTTGTCAATGAAAATATCTTACAATCAAAAGTTCTCCATACT
KN011856:42671-42685
GTAGAGCGTGAAAAACTTCCTGGCCAGAAC42671AATGTTGTCAATGAAGCCACAACTAGCCAGCTTCACCCTTATGAT
KN012004:25110-25124
GGGCCCAGAGGTATCAACTGTCACATAATA25110AATGTTGTCAATGAATTCATTGTCAAATTCATGTCAAAGAAACTC
KN012104:35645-35659
CCTTCTTGCCTTTGTCCTTCCCTTCCAGTC35645AATGTTGTCAATGAAGTCTTATCTTCTTCTTCAGTTCTTACCAAT
KN015487:26479-26493
ACACTTAAGCAATCATCCTGGACATGAAGC26479AATGTTGTCAATGAAAGGCAGCACTTAAGATTCAGGTGTATGAAG
KN005784:157736-157750
CTGGAAAAGGCCTTTGGAAACAGGCCTGAG157736TTCATTGACAACATTGTTATTTGCAATCTGTTTGGTCTTGAATAA
KN007888:104117-104131
TTCCTTGGCTGTTTTGAATCTACTAATAAG104117TTCATTGACAACATTCTTTATTTCTGTTAGTGTGATTTTTATTTC
KN009195:107917-107931
TTGATCAGATAATGTTCTAAAATACCAGAA107917TTCATTGACAACATTTCAAAATCTGAAGATTTCACATTAAAAAAA
KN009342:43768-43782
TTGAGAAAGAGCTAAAGGGAAACTAAGACT43768TTCATTGACAACATTTCAGAATGACAATCTGATTCATGGTGACTT
KN012629:83732-83746
TATACTAGTTTCAAGTATTCAACATAGTGA83732TTCATTGACAACATTCTCTATGCTGTACTTTCATCCCCATGACTA
KN015124:11239-11253
GGCACAATCATGTGAGATTACTGATGTCAA11239TTCATTGACAACATTCCTAAAACGTTGAAAACATGTATGATAAGT
KN027537:6082-6096
AACTTATAATGTTGATGGAAGCAGCCCATC6082TTCATTGACAACATTCTTCCATCCCAAACTTAACTTACAGTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/manPen1/AATGTTGTCAATGAA
lang : en | db : manPen1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28757/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.78:28757/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=43
0.090 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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