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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 18:09:00, GGGenome : Mouse genome, GRCm38/mm10 (Dec, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:131480113-131480127
AGACAAATTAAGACTGTATTGTATCATGGT131480113TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr5:42318229-42318243
TAGAATCAGTGTAAGCCATCCCTACACTTA42318229TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT
chr6:141421528-141421542
AAAGTACTATCAGTTTCCTAAATATATCCA141421528TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6:146175076-146175090
TGAACACATTCTCCCTGTTTGTGTCATCAC146175076TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10:47062898-47062912
TATTTCTTTCTGTTTGTTTATATGATGGAC47062898TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14:109241664-109241678
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109241664TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA
chr1:32385455-32385469
TTTTTAAAGACAGCAGGAAATAGCAAATAA32385455AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2:47333047-47333061
ATATCTATTTATTCATTGATGTAGCTTTCA47333047AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3:39320050-39320064
GTTGCCCCAGATTCAAGCTGCATGTTGACC39320050AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3:42777516-42777530
TTAAACATCAGAGAAATGAAAAATAAGTAA42777516AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
chr5:8380809-8380823
TAGCATCCATGCCCCCAAGCCAAAAGCATC8380809AATGTTGTCAATGAAACATTACTAAAGTTTAAAGTACATGTTGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/mm10/TTCATTGACAACATT
lang : en | db : mm10 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.78:28019/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.005 | search_minus_done; http://172.18.8.78:28019/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.091 | 0.001 | cgi_end;

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