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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:40:07, GGGenome : Mouse pre-spliced RNA, RefSeq curated protein coding on mm10, D3G 21.01 (Jan, 2021)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NM_018779.1|Pde3a;54611|chr6:141249268:141499351:+|prespliced::chr6:141249268-141499351(+)
position: 172260-172274
AAAGTACTATCAGTTTCCTAAATATATCCA172260TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
NM_010586.2|Itpr2;16439|chr6:146108298:146502223:-|prespliced::chr6:146108298-146502223(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_019923.4|Itpr2;16439|chr6:146108298:146502223:-|prespliced::chr6:146108298-146502223(-)
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_133235.2|Khdrbs2;170771|chr1:32172805:32657738:+|prespliced::chr1:32172805-32657738(+)
position: 212650-212664
TTTTTAAAGACAGCAGGAAATAGCAAATAA212650AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

GGGenome by @meso_cacase at DBCLS
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