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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-24 21:21:00, GGGenome : Mouse pre-spliced RNA, RefSeq curated protein coding on mm10, D3G 19.06 (Jun, 2019)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NM_018779.1|Pde3a|chr6:141249268:141499351:+|prespliced
position: 172260-172274
AAAGTACTATCAGTTTCCTAAATATATCCA172260TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
NM_133235.2|Khdrbs2|chr1:32172805:32657738:+|prespliced
position: 212650-212664
TTTTTAAAGACAGCAGGAAATAGCAAATAA212650AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
NM_019923.4|Itpr2|chr6:146108298:146502223:-|prespliced
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA
NM_010586.2|Itpr2|chr6:146108298:146502223:-|prespliced
position: 327134-327148
ATCATGGTATCCACACAGAAGGCCCAGTTA327134AATGTTGTCAATGAAGTGATGACACAAACAGGGAGAATGTGTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/mm10_refSeqCuratedProtCoding_prespliced_d3g1906/TTCATTGACAACATT
lang : en | db : mm10_refSeqCuratedProtCoding_prespliced_d3g1906 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.086 | 0.077 | search_plus_done; http://172.18.8.75:28801/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.092 | 0.005 | search_minus_done; http://172.18.8.75:28801/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=49
0.094 | 0.003 | cgi_end;

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