GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 01:29:23, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:32424536-32424550
TTTTTAAAGACAGCAGGAAATAGCAAATAA32424536AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2:47223059-47223073
ATATCTATTTATTCATTGATGTAGCTTTCA47223059AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3:39374199-39374213
GTTGCCCCAGATTCAAGCTGCATGTTGACC39374199AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3:42731951-42731965
TTAAACATCAGAGAAATGAAAAATAAGTAA42731951AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
chr5:8430809-8430823
TAGCATCCATGCCCCCAAGCCAAAAGCATC8430809AATGTTGTCAATGAAACATTACTAAAGTTTAAAGTACATGTTGAC
chr2:131322033-131322047
AGACAAATTAAGACTGTATTGTATCATGGT131322033TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr5:42475572-42475586
TAGAATCAGTGTAAGCCATCCCTACACTTA42475572TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT
chr6:141367254-141367268
AAAGTACTATCAGTTTCCTAAATATATCCA141367254TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6:146076574-146076588
TGAACACATTCTCCCTGTTTGTGTCATCAC146076574TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10:46938994-46939008
TATTTCTTTCTGTTTGTTTATATGATGGAC46938994TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14:109479096-109479110
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109479096TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/mm39/AATGTTGTCAATGAA
lang : en | db : mm39 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.78:28851/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.78:28851/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).