GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 22:07:59, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2:131322033-131322047
AGACAAATTAAGACTGTATTGTATCATGGT131322033TTCATTGACAACATTTAAAATTGTTACATATTTCAAAATTTTTTA
chr5:42475572-42475586
TAGAATCAGTGTAAGCCATCCCTACACTTA42475572TTCATTGACAACATTCATGCAATCTTCAGTGTTCATTACTTTGCT
chr6:141367254-141367268
AAAGTACTATCAGTTTCCTAAATATATCCA141367254TTCATTGACAACATTGTTCACTCTTCCATAAACATCTGCTGGTTA
chr6:146076574-146076588
TGAACACATTCTCCCTGTTTGTGTCATCAC146076574TTCATTGACAACATTTAACTGGGCCTTCTGTGTGGATACCATGAT
chr10:46938994-46939008
TATTTCTTTCTGTTTGTTTATATGATGGAC46938994TTCATTGACAACATTTCATATATGTAACCATCCTGTATCTCTGTA
chr14:109479096-109479110
TGCTGCTGGAATCTCTCCCTGGAGGGTGTG109479096TTCATTGACAACATTGCCCACTGAGAGTGACAACCTCAGCAGCCA
chr1:32424536-32424550
TTTTTAAAGACAGCAGGAAATAGCAAATAA32424536AATGTTGTCAATGAACAGTGTTTCCAAATGGTACATTAAGTATTC
chr2:47223059-47223073
ATATCTATTTATTCATTGATGTAGCTTTCA47223059AATGTTGTCAATGAACACTGTTACTTCGTTGAGCACATGAAAAGT
chr3:39374199-39374213
GTTGCCCCAGATTCAAGCTGCATGTTGACC39374199AATGTTGTCAATGAACTTCAACTACAAGTTCTGAGGCAGAATCTA
chr3:42731951-42731965
TTAAACATCAGAGAAATGAAAAATAAGTAA42731951AATGTTGTCAATGAATAAACATCCCTGTAAGTTAAGGTTTGCAAT
chr5:8430809-8430823
TAGCATCCATGCCCCCAAGCCAAAAGCATC8430809AATGTTGTCAATGAAACATTACTAAAGTTTAAAGTACATGTTGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/mm39/TTCATTGACAACATT
lang : en | db : mm39 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28851/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.78:28851/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=44
0.086 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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