GGGenome | Results

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2025-04-10 19:21:56, GGGenome : Gibbon genome, GGSC Nleu3.0/nomLeu3 (Oct, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr6:8935821-8935835

GAGGGCCTTTCCAGCTCCAAAGTCGATGGC8935821AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG

chr8:78331435-78331449

TTGAGTACGTAGAGGTTCTCAGCCCTTCTC78331435AATGTTGTCAATGAAGTAGATTGAGCTTTAATTGTATATTTAGGT

chr17:17801221-17801235

AAGTTCCAAAGTAAATTTGCATTATATGCT17801221AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT

chr19:67656798-67656812

TTCTGCCCTTTCACAAATAAACATAAAATC67656798AATGTTGTCAATGAAGCATGACTCATCTAATATGGGCCCAGAGGC

chr20:70593813-70593827

TGCTAGGAGTGATAAGGTGTGGCTGATGGC70593813AATGTTGTCAATGAATTATCAGGCTTTCCTCAAACTCCTTTCGTT

chr5:111678540-111678554

GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA111678540TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC

chr6:9134900-9134914

CATAGGTTGATAAAGAATCATGCATATATA9134900TTCATTGACAACATTGAATATCCATGAAACCATTGTCCTCACTTG

chr7b:60076820-60076834

TTGCTGTGAAGGATAAGGGATATGATTGGA60076820TTCATTGACAACATTGGAATAGATATGGTAGATTATTATATCAGT

chr7b:72676456-72676470

CAGAATATATTATCACTTTAAACACAGATT72676456TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA

chr7b:105514839-105514853

TTTGGACCCCCAAATCAGTCTTCATTTTCT105514839TTCATTGACAACATTCATTAAGTTCTGCAGAAATTAAACAGAATT

chr8:37133981-37133995

ATATTTTAAAATTCATCCATATTTCCACTT37133981TTCATTGACAACATTATTAAGTTTTTTGTGTCTTTTTTCAAATTA

chr17:29892064-29892078

GCAGTGCCTGGCCTGAGTCAGCACATTAGC29892064TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.78:28034/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.78:28034/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.089 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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