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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 10:19:23, GGGenome : Gibbon genome, GGSC Nleu3.0/nomLeu3 (Oct, 2012)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr6:8935821-8935835
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC8935821AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG
chr8:78331435-78331449
TTGAGTACGTAGAGGTTCTCAGCCCTTCTC78331435AATGTTGTCAATGAAGTAGATTGAGCTTTAATTGTATATTTAGGT
chr17:17801221-17801235
AAGTTCCAAAGTAAATTTGCATTATATGCT17801221AATGTTGTCAATGAATAGAATATAAATGTGCTTCTTTGCTGCAAT
chr19:67656798-67656812
TTCTGCCCTTTCACAAATAAACATAAAATC67656798AATGTTGTCAATGAAGCATGACTCATCTAATATGGGCCCAGAGGC
chr20:70593813-70593827
TGCTAGGAGTGATAAGGTGTGGCTGATGGC70593813AATGTTGTCAATGAATTATCAGGCTTTCCTCAAACTCCTTTCGTT
chr5:111678540-111678554
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA111678540TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr6:9134900-9134914
CATAGGTTGATAAAGAATCATGCATATATA9134900TTCATTGACAACATTGAATATCCATGAAACCATTGTCCTCACTTG
chr7b:60076820-60076834
TTGCTGTGAAGGATAAGGGATATGATTGGA60076820TTCATTGACAACATTGGAATAGATATGGTAGATTATTATATCAGT
chr7b:72676456-72676470
CAGAATATATTATCACTTTAAACACAGATT72676456TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr7b:105514839-105514853
TTTGGACCCCCAAATCAGTCTTCATTTTCT105514839TTCATTGACAACATTCATTAAGTTCTGCAGAAATTAAACAGAATT
chr8:37133981-37133995
ATATTTTAAAATTCATCCATATTTCCACTT37133981TTCATTGACAACATTATTAAGTTTTTTGTGTCTTTTTTCAAATTA
chr17:29892064-29892078
GCAGTGCCTGGCCTGAGTCAGCACATTAGC29892064TTCATTGACAACATTGGTTCGTTCAACAAATATTGCCTGAGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/nomLeu3/AATGTTGTCAATGAA
lang : en | db : nomLeu3 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.072 | search_plus_done; http://172.18.8.78:28034/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.78:28034/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=45
0.088 | 0.002 | cgi_end;

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