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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 14:57:02, GGGenome : Rabbit genome, Broad/oryCun2 (Apr, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:72228051-72228065
TAATTGGGATAATTTTGGAAGGTTCTTGGT72228051TTCATTGACAACATTTTCCACTTCCAAGATTCCCAATGTGTTTCT
chr2:8993558-8993572
GGTCATTCAAGAGAATGAGATTCTCCTGCC8993558TTCATTGACAACATTGGGTGAGAGATGTTGGAAAGAGTGAAGTCT
chr8:101728305-101728319
TCATTAGCATAATAGGTTTCAGAAAAGGTT101728305TTCATTGACAACATTAGTGATAGTCAAGATATGTGTATTGCCTGT
chr11:5979308-5979322
ATGAACTAGACTATTTCTTCCTTAACCCTT5979308TTCATTGACAACATTGATGACCTAAATTTTCCTCAGAAATTTTTC
chr12:61189330-61189344
CCAGCGCTCCTGCTCCTGTCCTGAATTAGC61189330TTCATTGACAACATTCTCTCCCCACCACCTCAGCTCTTTCCCAGA
chr12:127070873-127070887
ATTAAGCTTGATTACAGAAGCCATTTTTTT127070873TTCATTGACAACATTGACTAAACAATCTTCAAGCCATTTTTACAG
chrUn0004:5147466-5147480
TAAAAATGAACACTTATAGTTACTATCACT5147466TTCATTGACAACATTATTACTTGTAGGATCATTTTCATCCACACA
chr8:88233538-88233552
GACGAATCAATACTATATGGATACTGATTA88233538AATGTTGTCAATGAAATGGAAGGATGATTATAAGTCATTCATAAA
chr9:24076119-24076133
GACTGGTGTTCATATGCATATGTAATAGTG24076119AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGTAGCATTCT
chr13:58244823-58244837
GAGATTTTTTTTCCTGCCAAGAATGATAGC58244823AATGTTGTCAATGAATGTAAAATTTTGTAAAGAAACCTATTCATC
chr14:101719306-101719320
TTTTTTTTGTTTTTTCAATTTTTCTCATCT101719306AATGTTGTCAATGAAGAACTAACATACACTTTTGTAATTAGGAAA
chr16:27879991-27880005
GGGTATAGTGCTCAGTGGTTCAGGAGAACT27879991AATGTTGTCAATGAATCCTCCTGATCCTGGAGGTGAGATAGTTGC
chr19:41167397-41167411
TCTCCTTTATCTTTTACAAGTTTATAGTAA41167397AATGTTGTCAATGAAATCATACAATGACTGGATTTGCTCAGAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/oryCun2/TTCATTGACAACATT
lang : en | db : oryCun2 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.77:28053/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.005 | search_minus_done; http://172.18.8.77:28053/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.090 | 0.002 | cgi_end;

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