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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 06:11:01, GGGenome : Bushbaby genome, Broad/otoGar3 (Mar, 2011)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GL873520:7740260-7740274
AATTCTACTCATTTTACAAGCTCATGTTAC7740260TTCATTGACAACATTTTTTTCTTTTCTTCCCTTGTGAGATAATTC
GL873528:25655086-25655100
CATTTATCTCCAAGAGAGCCAACTATTTCC25655086TTCATTGACAACATTCCTAGCAGGCTCTTCATTGTAACTCCTTAA
GL873529:31688423-31688437
GCCCAAGACTGAACACTGCAAAGATTGACT31688423TTCATTGACAACATTCTGTAATAACACACAAGTTCTTAACATAGT
GL873536:29829836-29829850
CAAAGAAAGGTCAGAGTTTGAGGAAACTGT29829836TTCATTGACAACATTAAATATTTACTGATTCTCAACTTTATCCTG
GL873544:18612186-18612200
TTTGTGTGTAACTCGTTCCTAATTTGCTAA18612186TTCATTGACAACATTATGACCTACTTGGTCTTCCAAATTAGAAAA
GL873547:5671173-5671187
CAAAAATCTTTAACTTTCCCTCTTAAACAG5671173TTCATTGACAACATTCTAATCATTTTCTTCCCTCTTAATTTTATT
GL873553:6108472-6108486
ATGCCCGTATGTAAGATCAGTGGCTTTGTT6108472TTCATTGACAACATTCAAGGTAGGCGCTACTAACCTACTACACAC
GL873617:7484642-7484656
ATTGAAGCAAAGTAGTGCAATTATAATCTC7484642TTCATTGACAACATTAGCATATAATGCAAATTTACTTCACAAGTT
GL873619:6746693-6746707
GTTTCCCCCCATCTACAGGCTTCATATTAG6746693TTCATTGACAACATTGGATATTTGCTTTTCCATTTTTGTGATACT
GL873636:4834998-4835012
AACTGCATGTTTAAAATTTTAATATGACTA4834998TTCATTGACAACATTGGTGTGGACTAAAACTCTTTTAATTCTTAG
GL873696:821185-821199
ACAAACATCTGATTTTGTACAATACTCTCA821185TTCATTGACAACATTAAATAGCAATTAAACATTGGCTAAGTATCT
GL873925:9237-9251
TTATATTCTGGTTTGAACTGGTTCATTTTC9237TTCATTGACAACATTTTGAAAAGATGATCACTCAAATTATTTTGT
GL873521:15742609-15742623
TACAAAAAGCAGATGTGTAGTATTTAAAAT15742609AATGTTGTCAATGAACAGGGCGGTGCCTGTGGCTCAGTGGGTAGG
GL873525:4314901-4314915
AAAATAAACAGACTACATGTAGATACATGC4314901AATGTTGTCAATGAATCTCTTGAACATAATTTAGCAAAAGACGCC
GL873537:11294286-11294300
TTTCTTGACAGCCAAATGTGTTTACAAAAG11294286AATGTTGTCAATGAAGATTTATAGATATGGATCTTTTCTTTTTTA
GL873686:2385304-2385318
ACCCCTGGGTGGTTCTTTTCAGTTTGTGCC2385304AATGTTGTCAATGAAAATCTCATCTCAAAACATAAGAACCTGTGT
GL873989:12141-12155
CAGGATAAAGTTGAGAATCAGTAAATATTT12141AATGTTGTCAATGAAACAGTTTCCTCAAACTCTGACCTTTCTTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/otoGar3/TTCATTGACAACATT
lang : en | db : otoGar3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.083 | 0.074 | search_plus_done; http://172.18.8.78:28024/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.090 | 0.007 | search_minus_done; http://172.18.8.78:28024/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=38
0.091 | 0.001 | cgi_end;

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