GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2024-11-25 09:12:48, GGGenome : Chimpanzee genome, Pan_tro 3.0/panTro5 (May, 2016)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

chr2B:50423723-50423737
ATTGCAGCAAAGAAGCACATTTATATTCTA50423723TTCATTGACAACATTAGCATATAATGCAAATTTACTTTGGAACTT
chr3:86209079-86209093
TTGATTTTGTATACATTAAATAGTTGAAAC86209079TTCATTGACAACATTAAATTTGTTTTCTAGGCTCTATTGGGGTAA
chr4:152676540-152676554
CAGAATATATTATCGCTTTAAACACAGATT152676540TTCATTGACAACATTTTGTGGGCACCCATTTAATATTAATATTAA
chr4:169833303-169833317
AAAAACCTCTGATTTTGTGTAACACTCCTT169833303TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGATTACAT
chr6:64138559-64138573
CTATTTCAATCAACCATCTTGTAATCATAC64138559TTCATTGACAACATTTTACTCATACTATAATAAGTTGCTATTTCT
chr7:2685520-2685534
GTGGTGCCTGGCCTGAGTCAGCTCAGTAGC2685520TTCATTGACAACATTGGTTCGTTTAACAAATATTGCCTGAGAAGA
chr8:31074945-31074959
ATATTTTTAAATTCATCAATATTTCCACTT31074945TTCATTGACAACATTATTAAGTTTTATTGTGCCTCTTTTTCCAAA
chr13:69635510-69635524
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA69635510TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr18:26690716-26690730
ATATTTATATATGTATATATTTCATATTAT26690716TTCATTGACAACATTTACTTGGGAGATTTGTCTCAACAAAAATTA
chr19:43083049-43083063
AAGCCACCACACCCGGCCTATCTTAGCTTT43083049TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chr2B:86775289-86775303
AATGCCCCACATTTCATTAAGGGTGATGAC86775289AATGTTGTCAATGAAGAAGTTGCTTCTCATATAACTATACTGTCA
chr3:58360760-58360774
GCCTGTTTTTCATATGCATATGTAATAGGG58360760AATGTTGTCAATGAAAACACAATAGTATTTGGAGTGCAGCATAGT
chr4:68276735-68276749
ACTCACTGGATCCAATCAGCATAATGTCAT68276735AATGTTGTCAATGAAAAGAGTTGAACTCTGTAAAATATTTGAAGA
chr5:10000547-10000561
GAGGGCCTTTCCAGCTCCAAAGTCGATGGC10000547AATGTTGTCAATGAAAGATCAGCAGGTCAGTGCATTATACCCAGG
chr7:33279693-33279707
TCTACAGATTTTGGATTTACCAGCCCCCAC33279693AATGTTGTCAATGAATTCCTTAAAATCTCTCTCTCTCTCTCTCTC
chr7:81508261-81508275
AACTAACACCCATAAAAGGTATGACTCTTT81508261AATGTTGTCAATGAAGATTTAACATAATATTCTATAACAAATATA
chr12:81521768-81521782
ATAAGATAGGTTTGTTCCAGAAGTTTAAAA81521768AATGTTGTCAATGAATTTGATAAAGTTTAATATTCACATTAAAAG
chr16_NW_015974164v1_random:141976-141990
TAATAACCAACTAATGAGAACATACATTTA141976AATGTTGTCAATGAATGCACATTCAATTAATTTGAGAGCCACTTC
chr19:42912214-42912228
CTCCCTTAGGAGAGCTGTTAACATTATACT42912214AATGTTGTCAATGAAAAAGCTAAGATAGGCCGGGTGTGGTGGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/panTro5/TTCATTGACAACATT
lang : ja | db : panTro5 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28756/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.085 | 0.006 | search_minus_done; http://172.18.8.78:28756/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.087 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).