GGGenome | Results

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2025-04-17 06:46:17, GGGenome : Megabat genome, Broad/pteVam1 (Jul, 2008)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

scaffold_1156:249059-249073

CATGATAACGATCTGAGTCATGTAGTTGAG249059TTCATTGACAACATTTAAATAATCCATAGCTCGTTTCCACTGTTC

scaffold_3160:6735-6749

AGTATGCTGCACTCCAAATACTTTTGTGTT6735TTCATTGACAACATTTACTATTACATATACATATGAAAAACAGTC

scaffold_5546:30223-30237

TATGTGTCTTCTTGATGTTCATTTAGGTCA30223TTCATTGACAACATTATGGGAAAAAACTAGACCAGATAAACATTC

scaffold_5957:55128-55142

ACTGCATATTTAAAACAAATTTAGTTTCTT55128TTCATTGACAACATTGGAGAAGAAAAAAATATTATTTTAGAATAC

scaffold_6037:40166-40180

CTCACCCAAAGGGTTGGGTAACAGGGAAAT40166TTCATTGACAACATTTGGGCAAAAGTATTTGGGGAGATGCCCTTT

scaffold_15051:3485-3499

GTTAAAAAGAACAAACCGATTCAAGGTTTG3485TTCATTGACAACATTCCAGTGAGAGTCGAAAATGGTATAAGAGCC

scaffold_25484:8465-8479

TCTGTTAAAAACACTGATAGAACTCATATT8465TTCATTGACAACATTACATCATTTCTAAGAAGATTTAATAACCTT

scaffold_2419:35072-35086

TCACAACTGAGACCAGCTTTCAGCAGTGAG35072AATGTTGTCAATGAAATAATGTTGACATAAGTACTATAGGTGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.080 | 0.071 | search_plus_done; http://172.18.8.78:28042/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.006 | search_minus_done; http://172.18.8.78:28042/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=43
0.086 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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