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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-25 10:08:20, GGGenome : RefSeq complete RNA release 225 (Jul, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PREDICTED: Odocoileus virginianus texanus dynein heavy chain 5, axonemal-like (LOC110141408), mRNA
XM_020900314.1:451-465
ATCATCAGGGTGAAGCTGGCCAGTTGTGGC451TTCATTGACAACATTGTTTTGGCCAGGAAGTTTTTCACACTCTAC
PREDICTED: Drosophila serrata uncharacterized LOC110182939 (LOC110182939), ncRNA
XR_002319591.1:293-307
ACTAAGCAATACCGGCTAATATCGCTCCGT293TTCATTGACAACATTTAGATTTTCCTGTGGAAAACATTTCCCATC
PREDICTED: Drosophila serrata plexin-A4 (LOC110185457), mRNA
XM_020954300.1:6810-6824
CGTGATCAGGAGGGACAGGATGTTCTCCTC6810TTCATTGACAACATTTTTAGGTTCACGCAGGCTGGTTCCGAAGTG
Agaricus bisporus var. bisporus H97 ATP2 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase (AGABI2DRAFT_190409), mRNA
XM_006457965.1:1000-1014
CGTGATGAAGAAGGTCAGGATGTGTTGCTC1000TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
PREDICTED: Arabidopsis lyrata subsp. lyrata ATP synthase subunit beta-1, mitochondrial (LOC9307425), mRNA
XM_002873330.2:1074-1088
CGTGATGCCGAAGGCCAAGACGTCTTGCTT1074TTCATTGACAACATTTTCCGTTTCACTCAGGCCAACTCTGAAGTG
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X1, mRNA
XM_013072408.2:7215-7229
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC7215TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X2, mRNA
XM_021258622.1:6570-6584
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC6570TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
PREDICTED: Heterocephalus glaber dynein axonemal heavy chain 5 (Dnah5), transcript variant X3, mRNA
XM_021258623.1:7218-7232
ATCATAAGGGTGAAGCTAGCCAGTTGTGGC7218TTCATTGACAACATTGTTCTGGCCAGGAAGTTTTTCACACTATAC
Kazachstania africana CBS 2517 hypothetical protein (KAFR0K00700), partial mRNA
XM_003959511.1:2158-2172
ATAGCAGCAATTAGTAAGTCACTAGCAAAA2158TTCATTGACAACATTCGTGATGAGTCGTCACAAAACTCTGCAGAT
Naumovozyma dairenensis CBS 421 hypothetical protein (NDAI0J02660), partial mRNA
XM_003672353.1:42-56
GAAGATAATACTGCTGTCGTCATGTCTGTT42TTCATTGACAACATTCCTTTTGGTTATCATAGCGACTGCTGGTTC
PREDICTED: Mizuhopecten yessoensis ATP synthase subunit beta, mitochondrial (LOC110452283), mRNA
XM_021500702.1:927-941
CGTGATCAGGAGGGACAGGACGTACTGCTC927TTCATTGACAACATTTTCAGATTCACACAGGCAGGCTCAGAGGTG
Wallemia mellicola CBS 633.66 beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase mRNA
XM_006958912.1:1477-1491
CGTGATGACGAAGGTCAAGATGTCTTGCTC1477TTCATTGACAACATTTTCCGTTTCACTCAAGCAGGTTCTGAGGTC
PREDICTED: Aedes aegypti ATP synthase subunit beta, mitochondrial (LOC5577999), mRNA
XM_001656687.2:919-933
CGTGATCAGGAAGGACAGGATGTGCTGCTC919TTCATTGACAACATTTTCCGTTTCACCCAAGCTGGTTCTGAGGTA
PREDICTED: Aedes aegypti ATP synthase subunit beta, mitochondrial (LOC5576214), mRNA
XM_001655941.2:1037-1051
CGCGATCAAGAGGGACAGGATGTGCTGCTC1037TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTA
PREDICTED: Chenopodium quinoa uncharacterized LOC110707360 (LOC110707360), mRNA
XM_021885383.1:823-837
TGTGACATAGAACTACCTGATCCTGACGTC823TTCATTGACAACATTGACTGGGATTCCAATGTCGATCCCAGTCTT
PREDICTED: Zootermopsis nevadensis ATP synthase subunit beta, mitochondrial (LOC110837409), mRNA
XM_022079501.1:949-963
CGAGACCAAGAAGGACAGGATGTGCTGCTG949TTCATTGACAACATTTTCAGGTTCACCCAAGCTGGTTCAGAGGTA
PREDICTED: Momordica charantia ATP synthase subunit beta, mitochondrial (LOC111018677), mRNA
XM_022294875.1:1084-1098
CGTGATGCTGAAGGGCAAGATGTGCTTCTC1084TTCATTGACAACATTTTCCGTTTTACCCAGGCTAATTCAGAGGTG
PREDICTED: Momordica charantia ATP synthase subunit beta, mitochondrial-like (LOC111020045), mRNA
XM_022296600.1:1072-1086
CGTGATGCTGAAGGACAGGATGTGCTTCTC1072TTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCTGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial (L202_03082), mRNA
XM_019136867.1:970-984
CGTGATGACGAAGGCCAGGATGTGTTGCTC970TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial, variant 1 (L202_03082), mRNA
XM_019136868.1:1124-1138
CGTGATGACGAAGGCCAGGATGTGTTGCTC1124TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Cryptococcus amylolentus CBS 6039 ATP synthase subunit beta, mitochondrial, variant 2 (L202_03082), mRNA
XM_019136869.1:1172-1186
CGTGATGACGAAGGCCAGGATGTGTTGCTC1172TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Isaria fumosorosea ARSEF 2679 ATP synthase beta chain (ISF_06605), partial mRNA
XM_018850209.1:871-885
CGTGATCAGGAAGGCCAGGACGTGCTGCTC871TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAAGTG
Penicillium expansum ATPase, F1 complex beta subunit/V1 complex, C-terminal (PEX2_107420), partial mRNA
XM_016748010.1:874-888
CGTGACGAGGAGGGTCAGGACGTGCTGCTC874TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Talaromyces atroroseus ATP synthase subunit beta, mitochondrial (UA08_08849), partial mRNA
XM_020263894.1:877-891
CGTGATGAGGAGGGTCAGGATGTGCTTCTC877TTCATTGACAACATTTTCCGTTTCACCCAAGCCGGTTCTGAGGTG
Tsuchiyaea wingfieldii CBS 7118 ATP synthase subunit beta, mitochondrial (L198_01376), partial mRNA
XM_019173539.1:964-978
CGTGATGACGAAGGTCAGGATGTGTTGCTC964TTCATTGACAACATTTTCCGATTCACCCAGGCCGGTTCCGAGGTG
Kockovaella imperatae putative ATP synthase beta chain mitochondrial precursor (BD324DRAFT_618644), mRNA
XM_022015060.1:1029-1043
CGAGACGAGGAGGGACAGGATGTGTTGCTT1029TTCATTGACAACATTTTCCGATTCACCCAAGCCGGTTCCGAAGTG
Malassezia pachydermatis atp synthase f1 beta subunit (Malapachy_1125), partial mRNA
XM_018135635.1:949-963
CGTGACGACGAGGGTCAGGATGTGCTGCTC949TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCGGAGACT
Lobosporangium transversale P-loop containing nucleoside triphosphate hydrolase protein (BCR41DRAFT_355073), partial mRNA
XM_022024445.1:855-869
CGTGATCAGGAGGGTCAGGATGTGTTGCTC855TTCATTGACAACATTTTCCGTTTCACTCAGGCTGGTTCTGAGGTG
Coprinopsis cinerea okayama7#130 ATP synthase subunit beta (CC1G_01082), partial mRNA
XM_001832968.2:773-787
CGTGACGAGGAAGGCCAGGATGTGTTGCTC773TTCATTGACAACATTTTCCGATTCACTCAAGCTGGTTCTGAAGTG
Pneumocystis murina B123 hypothetical protein (PNEG_00722), partial mRNA
XM_007874432.1:969-983
TTGTTCTACAAATAAAACATTATCAGAAAA969TTCATTGACAACATTTTGCGAACCTTTTTCTTTAAAAGATAATTT
PREDICTED: Limulus polyphemus P protein-like (LOC106472322), partial mRNA
XM_013932959.2:606-620
GTTATATGGGTGTCAGCCATAGCATCCAGT606TTCATTGACAACATTCCATTTACAACTGTTATGATCAAGATTGTT
Parastagonospora nodorum SN15 hypothetical protein (SNOG_01298), mRNA
XM_001791891.1:897-911
CGCGACGAGGAGGGTCAGGACGTGTTGCTC897TTCATTGACAACATTTTCCGCAGGGCCGGTTCCGAGGTGTCTGCT
Fusarium verticillioides 7600 ATP synthase subunit beta, mitochondrial (FVEG_11352), mRNA
XM_018900578.1:1133-1147
CGAGACGAAGAGGGTCAGGACGTGCTGCTT1133TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCCGAGGTG
Fusarium verticillioides 7600 ATP synthase subunit beta, mitochondrial (FVEG_11352), mRNA
XM_018900579.1:1042-1056
CGAGACGAAGAGGGTCAGGACGTGCTGCTT1042TTCATTGACAACATTTTCCGATTCACTCAGGCCGGTTCCGAGGTG
Pochonia chlamydosporia 170 1,4-alpha-glucan branching enzyme (VFPPC_03485), partial mRNA
XM_018282981.1:3049-3063
CGTGACCAGGAGGGCCAGGATGTCCTGCTC3049TTCATTGACAACATTTTCCGATTTACTCAAGCCGGATCTGAGGTG
Eremothecium gossypii ATCC 10895 ABR169Wp (AGOS_ABR169W), partial mRNA
NM_208470.2:841-855
AGAGACGAGGAGGGTCAGGATGTGTTGCTG841TTCATTGACAACATTTTCAGATTCACCCAAGCCGGTTCCGAAGTG
PREDICTED: Crassostrea virginica MAP kinase kinase kinase win1-like (LOC111120877), mRNA
XM_022461893.1:2348-2362
TAAACATTAAACAATGTTAAATGACCCGTG2348TTCATTGACAACATTTTATTATTGTTTCTTTACAAATATGTACAT
PREDICTED: Crassostrea virginica cell migration-inducing and hyaluronan-binding protein-like (LOC111122089), mRNA
XM_022463645.1:2018-2032
GTGGCCCATTCAAACCAAAAGAGTGGATTG2018TTCATTGACAACATTCTGAAGAAAGACGGATCTATTTTACAATCC
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111122827), mRNA
XM_022464818.1:2073-2087
AGAGCCACGTACAACAATGAGGGTGTGGGA2073TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111111291), transcript variant X1, mRNA
XM_022448172.1:2073-2087
AGAGCCACATACAACAATGAGGGTGTGGGA2073TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica laminin subunit gamma-1-like (LOC111111291), transcript variant X2, mRNA
XM_022448173.1:1039-1053
AGAGCCACATACAACAATGAGGGTGTGGGA1039TTCATTGACAACATTAAACTGGACACAGCAAGACAAGGCTCAAAT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113485), mRNA
XM_022451781.1:235-249
ATACAAGAAAGTGTTGCTGATTTTTCTGAT235TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113485), mRNA
XM_022451781.1:1639-1653
ATACAAGAAAGTGTTGCTGATTTTTCTGAT1639TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
PREDICTED: Crassostrea virginica mucin-3A-like (LOC111113486), mRNA
XM_022451782.1:323-337
ATACAAGAAAGTGTTGCTGATTTTTCTGAT323TTCATTGACAACATTATCAGCTGTAGTTGCAATTCCTACTGTTCT
Candida orthopsilosis Co 90-125 Atp2 F1 beta subunit of F1F0 ATPase complex (CORT_0E02270), partial mRNA
XM_003869897.1:829-843
AGAGATGAAGAAGGTCAAGATGTCTTGTTG829TTCATTGACAACATTTTCAGATTCACCCAAGCTGGTTCGGAAGTG
Aspergillus glaucus CBS 516.65 hypothetical protein (ASPGLDRAFT_50266), mRNA
XM_022547272.1:927-941
CGTGACATCGAGGGTCAAGACGTGCTGCTC927TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Aspergillus bombycis ATP synthase F1-sector subunit beta (ABOM_011529), partial mRNA
XM_022538657.1:868-882
CGTGACGAGGAGGGTCAGGATGTGCTGCTC868TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCTGAGGTG
Zygosaccharomyces rouxii uncharacterized protein (ZYRO0D01760g), partial mRNA
XM_002496464.1:841-855
AGAGATGAAGAAGGTCAAGATGTCTTGCTT841TTCATTGACAACATTTTCAGATTTACCCAAGCTGGTTCCGAAGTG
Penicillium arizonense hypothetical protein (PENARI_c009G00142), partial mRNA
XM_022631702.1:868-882
CGTGACGAGGAGGGTCAGGATGTGCTGCTC868TTCATTGACAACATTTTCCGTTTCACCCAGGCCGGTTCCGAGGTG
Penicilliopsis zonata CBS 506.65 hypothetical protein (ASPZODRAFT_137937), partial mRNA
XM_022724401.1:874-888
CGTGACGAGGAGGGTCAGGATGTGCTGCTC874TTCATTGACAACATTTTCCGTTTCACTCAGGCCGGTTCCGAGGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/refseq225/TTCATTGACAACATT
lang : en | db : refseq225 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.136:28994/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.185 | 0.051 | search_minus_done; http://172.18.8.136:28994/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=0
0.186 | 0.000 | cgi_end;

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