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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-24 18:32:55, GGGenome : Rhesus genome, BGI CR_1.0/rheMac3 (Oct, 2010)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr2:80425458-80425472
ACTATGCTGCACTCCAAATACTATTGTGTT80425458TTCATTGACAACATTCCCTATTACATATGCATATGAAAAACAGGC
chr5:142597777-142597791
CAGAATATATTATCGCTTTGAACACAGATT142597777TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
chr5:159514645-159514659
TAAAACCTCTGATTTTGTGTAACACTCCTT159514645TTCATTGACAACATTAAACAGCAATTAACTATTTGCTGACTACAT
chr5:175559001-175559015
TTTGGACCCCCAGATCAGTCTTCATATTCT175559001TTCATTGACAACATTCATGAAGTTCTGCAGAAATTAGATAGAATT
chr5:180375606-180375620
GCCTGAGCCACCATGCCCAGCTTGCTATTC180375606TTCATTGACAACATTCACTTAAACAAACAAACATCCATAAAATTA
chr16:14512275-14512289
GCCTCTGGGCCTATATTAGATGGGCCATGC14512275TTCATTGACAACATTGATTTTATGTTTATTTGTGAAAGGGCAGAA
chr17:47830159-47830173
TGTTCAAAGTTTTCCCCTCCAATGTATCTT47830159TTCATTGACAACATTCGGATTTATCACATCAATCAGTCAATAAAT
chr17:64726053-64726067
GCAGTCTGGAGGTTCTCCCTGGAGGCTGTA64726053TTCATTGACAACATTGCCTGAGGTAACTCACACTGAGGTGACAAC
chr19:47568572-47568586
GTGAGCCACCACACCGGCCTATCTTAGCTT47568572TTCATTGACAACATTAGTATAATGTTAACAGCTCTCCTAAGGGAG
chrUn_JH297300:47-61
TGAGCCACCACCCCTGGCCTGTCTTAGCTT47TTCATTGACAACATTAGTATAATGTTACAGCTCTCCTAAGGGAGT
chr7:100511054-100511068
TTAATATTAATATTAAATGGATGCCCACAA100511054AATGTTGTCAATGAAAATCTGTGTTCAAAGCGATAATATATTCTG
chr11:76588551-76588565
GTAAGATAGGTTTGTTCCAGAAGTTTAAAA76588551AATGTTGTCAATGAATTTGATAAAATTTAATATTCACATTAGAAG
chr14:47628077-47628091
GTTTGCTCTATTCACTGTCCTCAACGCTAG47628077AATGTTGTCAATGAACAAGACATATCTATGTTCCTGGAAACTCAA
chr19:47410150-47410164
CTCCCTTAGGAGAGCCGTTAACATTATACT47410150AATGTTGTCAATGAAAAAGCTAAGATAGGCAGGGCGTGGTGGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/rheMac3/TTCATTGACAACATT
lang : ja | db : rheMac3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.079 | 0.070 | search_plus_done; http://172.18.8.77:28056/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.084 | 0.005 | search_minus_done; http://172.18.8.77:28056/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=40
0.085 | 0.001 | cgi_end;

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