GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-11-22 09:21:00, GGGenome : Rat genome, RGSC Rnor_6.0/rn6 (Jul, 2014)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr2
position: 239732088-239732102
ATACCAAGTAAAAAAACAAAAAAACAAAAA239732088AATGTTGTCAATGAAGGTGTGGAAGAAAATTTTCCAAACCTAGTG
chr3
position: 31282717-31282731
CTACTTATTCATTCATGTATGTGGGTTTCA31282717AATGTTGTCAATGAACACTGCTGCTTCATCGAACACATGAAAAAT
chr5
position: 97952035-97952049
CATTGTCAACAGTTATACATTTGAAACTTT97952035AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr5
position: 98026329-98026343
CATTGTCAACAGTTATACATTTGAAACTTT98026329AATGTTGTCAATGAAATAGATCTGTTCATCAAATAATCTGAAAAA
chr6
position: 69203225-69203239
CCATAGATTAGTCATAGATAGCAGCTACTA69203225AATGTTGTCAATGAAGTTTCTACACAAATGGTAATTAGGCAATTT
chr7
position: 112621412-112621426
TCTCTTATGTATCCATTGTCCAATTTCTAG112621412AATGTTGTCAATGAACTGTGTCTTTGAGGCAGTTTCTTTTTGAGC
chr11
position: 80854350-80854364
TTATTCTCTTTAAAATTCACCACAAGGAAA80854350AATGTTGTCAATGAAAATTTAACAATAAGAAAAGAAGGTAAAAAC
chr2
position: 41926733-41926747
TTTTCAAAATCTTTTGCCTGTATAGACTTT41926733TTCATTGACAACATTAAACTGTATGACATGCAAAAAATAACAGGT
chr2
position: 57234252-57234266
CCTCTCCCATTTACATTTAGTTTTAAGTAA57234252TTCATTGACAACATTTTTTGCATTGTTCAGCCCTTTACCTGTATT
chr2
position: 60329867-60329881
CTGAACTTTCACCATAACAACCCATTAGGT60329867TTCATTGACAACATTCTATGGCAGCTATAGACCCCAACTCCAAAT
chr2
position: 91373041-91373055
TGAATGAAAGGTCAGAGTTCAAGGTGTGAT91373041TTCATTGACAACATTAAATATTTACTGAATCTTAAATCTTATCCT
chr4
position: 160096536-160096550
AAACTGCGCTAAGCAAGACGGTATGGTATT160096536TTCATTGACAACATTAAAGAAAATAGAGAGATAGACACTCGTGTG
chr14
position: 32365434-32365448
GAAGCTAATAGTGCAATCGCCATGGTCTCC32365434TTCATTGACAACATTAACAGCTGTAATAAAATCAAGATATTGGCA
chr18
position: 24697076-24697090
ACATTCCTTACTCCTCTGACAGCAGTTTCT24697076TTCATTGACAACATTCAGGCTATCAGGCCTGATGTTGAGGTCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/rn6_d3g2101/AATGTTGTCAATGAA
lang : en | db : rn6_d3g2101 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.085 | 0.076 | search_plus_done; http://172.18.8.75:28872/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.094 | 0.008 | search_minus_done; http://172.18.8.75:28872/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=43
0.098 | 0.005 | cgi_end;

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