GGGenome | Results

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2025-04-08 05:23:09, GGGenome : Chicken genome, Gallus_gallus-5.0/galGal5 (Dec, 2015)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr2:3581379-3581393

ACTTCACACTCTACTTGCACAGAGTTAAAA3581379TTCATTGACAACATTGCTCTAAATCATCAGACAAGGATGTAATGG

chr14:14568282-14568296

AAGAGGGGGTGGTGAGAGAGGAAGCTGTGC14568282TTCATTGACAACATTCCTTGATGTTGTTGCCACTGGTAGAGTGGA

chr21:738706-738720

TGCAGCAAATATTTTAAAGAAAACATGAAA738706TTCATTGACAACATTAATCAACAAATATTATTCAACTTATATTGG

chrZ:49987798-49987812

CATGATAACAATCTGTGTCATGTAATTGAG49987798TTCATTGACAACATTTAAGTAATCCATAGCTCGTTTCCATTGTTC

chr3:93447939-93447953

TAGCAGACTTGTAACCTTTATGAATCTGTA93447939AATGTTGTCAATGAAATGGCTTCTAAAGATGATTAAACACCATAT

chr4:11295649-11295663

TTCAGGGTACAGCCACAGTCCCTGATGTTA11295649AATGTTGTCAATGAAATGTCATGAGTGCTGTTCTGCAATAAGGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.082 | 0.073 | search_plus_done; http://172.18.8.76:28755/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.76:28755/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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