GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-20 00:17:11, GGGenome : Stickleback genome, Broad/gasAcu1 (Feb, 2006)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chrII:7454212-7454226
AGGAGAAACCTTTGTGTGTCAACTGTTTGA7454212TTCATTGACAACATTTGGAGTTCATTAAAATCAGCATAGCAACAT
chrUn:5453975-5453989
CATACAAGTTAATTGTTTGCTGTTGTGGTT5453975TTCATTGACAACATTGATTGAATTGTGGTTTTCATTGACAACATT
chrUn:5454005-5454019
TTCATTGACAACATTGATTGAATTGTGGTT5454005TTCATTGACAACATTGATTGAATCTCCTCCGCCTTAAGGTAGCAA
chrXIX:2136493-2136507
AATATATTTTGTGCGAGAAAACGTTTTTTC2136493TTCATTGACAACATTACTCTCCCTGTCATGAACAATACACCTTTT
chrUn:61583944-61583958
CCCATTTCTGTCACTCAGCAAAAGTGTGAC61583944AATGTTGTCAATGAATTGCTGAATCAAACAAATGCATGCTGAAGG
chrVII:16960693-16960707
TATTTCTGAGAAGCGCATGGGCCAAATCCT16960693AATGTTGTCAATGAAAATAGAGCAATGATTTGGCAGAGATGTACT
chrXII:16925615-16925629
AAATAAGGCAATTCTTGGTAGCCTCTCATC16925615AATGTTGTCAATGAACACATTAAATACCTGCAGGTTGGGGTTACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/gasAcu1/TTCATTGACAACATT
lang : en | db : gasAcu1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.081 | 0.073 | search_plus_done; http://172.18.8.76:28082/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.086 | 0.005 | search_minus_done; http://172.18.8.76:28082/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.087 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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