GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 06:16:25, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:11305254-11305272
AGCCAGTGTGCATGGGTAGGCGATTCTCAT11305254ACAATCCAAGCTAAAGTGTTATTTCTCCTCTGAAGGCTGGAATTTCCTG
chr1:23712158-23712176
ATAGAGTTCTAGAATGACTAGACACCAGTT23712158AGAATCCAAGGATATTTGTGCTCTAAGGGCATACCATGTGCAACCCAGA
chr1:34981311-34981329
TTGTTTTATAAATTAAACACAGTTCTAACC34981311ACAATCCCAGCATAATATTTGTAGAAATTCAGAAGCTGTTTTCAAAATT
chr1:35056023-35056041
CAGGGAAAAGGAAGAAGGAATTTACTTTTT35056023ACAATCAAAGCAGAGTTGTGGTGAGCAACCCCTGACTCCGACATTGCCA
chr1:35432029-35432047
CACCATGCCTTAATTTCCAAGCAGAATTTG35432029ACAATCCAAGCAAAATGATTTTAATTAATTGGAATATTAGACTTTCCAT
chr1:37190827-37190845
CTTACCTCCTGTTAGTATGCCCAAGCAGGG37190827ACAATCTAAGCATAAAAGTCAGTAATTACGGGCAAATGGCACAAACCAA
chr1:42670716-42670734
AGAGGGAGAAAATGAAAACAAGACTGAAAG42670716AGAATCTAAGCATAAGTGTGAGAGATATATGGCTCTGGAGTACTCATGG
chr1:57753234-57753252
TTATTTGCAGGTTATATGCTGTCTCCATAG57753234AAAATCCAAGCATAGTTGGAGAAAGTATTAGTAATAAAAGAGCATAACG
chr1:66075468-66075486
AATAAGAAAATCCTTGACTTGAAGGAGTTT66075468ACAATCCAAGCCTAATTGTGACTATTTCTGAAGGCAGAGAACACAGAAT
chr1:69556277-69556295
TTTATTTACTGTGTTATAAAATTTTCATAC69556277ACAGTTCAAGCATAATTCTTAAAGATGAATGAATTAGATGAATGTGAGA
chr1:71451230-71451248
GCCACCCAGAAGGACTACAGGAGGGCAGTC71451230ACAATCCAGGCACAAGTGTTTCTTGTGATTAGGCAAATCTGAAGCCTGT
chr1:71463207-71463225
CAGACTTTCATATTCGATGAAGTCAATCCA71463207ATAATCCAATTATAATTGTTATTAATGACCACCAGATATTCTGATTTAA
chr1:80332483-80332501
AAGAAAATGGGTTTGGAGACAGGACTAGAT80332483ACAATCAAAGTATAATTGGATGTCACCACAGTCTTATCACTTCAGGTAC
chr1:94536897-94536915
CCTACTCTAATCTAGCTACTTTCAAGCAGG94536897AAAATCCAATCATAATAGTGCCTATTATGCTGCATATTATAAAATAATG
chr1:107668090-107668108
ACTTCAACAAGACCCAAAAAATCTCACATA107668090ACCATCCAAGCAGAATAGTCCAGGGCTAATATGGTGGTCTGTTACATCA
chr1:112697313-112697331
TCAAGCATTTATTCTTTCTTTGTGTTACAA112697313ACAATCCAATCATACTTTTTTAGTTATTTTTAAATGTACAATAAATTGT
chr1:114061114-114061132
CTTACTGTTTTTTTTGTGTCTACATATAGT114061114ACAATAAAAGCATAATTTTAGTATCTTTAATGTAGATGTTTGATTAGAT
chr1:120277011-120277029
CTGCTTCCCTCAGCTCTCAAGCAGACAAGA120277011ACAGTCCCAGCATCATTGTGTGGTCATGAGAATTAATTAAGCTGATCAT
chr1:143900672-143900690
TGAGTCCCAGATAAAAAAATCAAATCTACA143900672AAAATCTAAGCATAATTGGAGGATTTAAAGACCCTTGACAACCTAGCTT
chr1:144043996-144044014
TCATTTATTTTGAGCCAGGGCTTGAAGCAG144043996ACAATCCAAGCATCCTTCTAAACTATCCTCAGTCTTGTCAACAGCTGTT
chr1:149454080-149454098
TGAGTCCCAGATAAAAAAATCAAATCTACA149454080AAAATCTAAGCATAATTGGAGGATTTAAAGACCCTTGACAACCTAGCTT
chr1:152841666-152841684
AAGTGATAATTATCTTCACAAATGTTGTAA152841666ACAATATAAGCATCATTGTGATAAAAATAACACATACTAATTTTATTCT
chr1:155212363-155212381
TTAAATGATCTCAGTGAAGTCTTTCTAGAT155212363ACACTCCAAGCAAAATTGATCATTTCTTCTTCTAGGTTCCTCCAGTAAT
chr1:155620722-155620740
AAAAGATTTAACAAACATGGTCCAACATGG155620722TCAATGCGAGCATAATTGTTAATAATGTGCCAGCTAAGGGAAGTAGACA
chr1:165020419-165020437
ATATTTAAGTCAGTGGCTCTCTCAACTAAC165020419CCAATCCAAGCTTAATTTTCAATCGTTGCTTAGCTGTTAAGTTTTCTTT
chr1:171008445-171008463
TTTATGAAATAAGTATCTGCAGTTGTAAGA171008445ACAATCCAAATATAACTGTGGTTTAAACAACATAATAATTTATTTCTCT
chr1:178439999-178440017
TGTCAGGTGTGGACTAGATTGCTTTCCCTT178439999ACAATCCAGGCAGAATTGAAATGTCCGAGCATCTTTTGTCAACTGAACT
chr1:179042095-179042113
CAAAAAGTTGTCTCTAGAGAAAATACTATT179042095ACAATCTAAGCATGATTCTCTGTGGAGACTAATTTTTTCCCCTTTTGCC
chr1:189874684-189874702
TCCTGGTCCTACCCTTGACATGTGGGGATT189874684ACAATTCAAGAATAATTGTGAAGTGCCCCTGCCCACTCCAATATCTCAT
chr1:190090498-190090516
AACAAATTACAGTATGATAGAACTAAAAGC190090498ACAAACCAACAATAATTGTACAATTAAGAAAAACAGCACACATTAAGGT
chr1:190520358-190520376
ATGTAAAATGAGACATTGGTAATTTTCAAT190520358ACAATCAAAGGATAATTGCACTGACAATAATAGGAAAGGAAGGCTTTAT
chr1:194790129-194790147
AAACATTAATATTTACCTCAATTTAAAAAT194790129AAAATCCAACCATAAATGTATTTGATCTAATATATTGCATAGAAAGTTT
chr1:202899692-202899710
TCCCCTCAAGCGTTTATCCTTTGTGTTAAA202899692ACAATCCAAGTATACTTTTAGTTATTTTAAAATGTACAATTCAATTATT
chr1:206506703-206506721
TCATTTATTTTGAGCCAGGGCTTGAAGCAG206506703ACAATCCAAGCATCCTTCTAAACTATCCTCAGTCTTGTCAACAGCTGTT
chr1:213196584-213196602
TAGGGAGGAACATTGATTGATTTTTAGAAT213196584ACCATCCAACCATAATTGCATACCTAGTCAGGGATTGAGACAATGAAGA
chr1:230431641-230431659
GAGATGATCCTGGATTATTCAAATGGGCTC230431641TCAATCCAACCATAAGTGTCCCTATAAAAGAGAGACAGGCTGGGCACTG
chr1:245232445-245232463
GGGTTCAAGGCACCGACCCCCGTGCAGTTG245232445AAAATCCAAGTATAATTTTGCCTCCCCCAAAACTTAAACTAATAGTCTA
chr2:971362-971380
ACAAAAAATACCTACTGTGTTTTAAACAAA971362AAAATCTAAGCATAATTGAAGACTGGAATTAATTGTGTGTTCATCCTGA
chr2:11424854-11424872
AGTCTGATCATTAATGACTCTTGCCTGCTT11424854ACAATCCAAGGAAAATGGTTCTTTAATTAAGACAGTACTGTTAAGCAAC
chr2:11782609-11782627
CCTAGACATTTATAAGCACTCTAATGGATA11782609ACAATCCAAGAATAAATGATTGTAAAAGATGATGCCGAAGAGTTGATGT
chr2:14358145-14358163
CAGGCATACTTGGTGTGACTTTTATTAAAA14358145ACAATCCAAGGATAAGTGGTCCTGCATGGTTCAAAACCATGTTGTTCAA
chr2:19491185-19491203
TTAGTCAGGGTCCTAGCAGAAAAAGGTAAC19491185ACAATCAAAGCATTATTGAATAGGTCATTTGGGGAGGGATACACTCCAA
chr2:40878927-40878945
GACTCTGTCTCTACAAAATATTAATATAAA40878927AAAAGCCAGGCATAATTGTGCATGCCTGTATTTCCAGCTACTCAGGAGG
chr2:41368370-41368388
AAGATATGCCCATTGCTTTCAAGATAATCA41368370AAAATCTAAGCATAATTTTCCAGTCTTATCATTCTCTCATAGGCAATGT
chr2:41369771-41369789
AGAGACCCTGGGCACCAGAGGCAGTCAAGG41369771ACAATCCAAGGACAAATGTGCTTCTCTGTTTGGACAAGGATCAGACTCT
chr2:44599043-44599061
AATTTGATTATTTTGGAGGAGGATCCAAAT44599043AAAATCCAAGCATTATTATTGGTTGATATGCCCCACACTTAAAAACCTG
chr2:58424455-58424473
ATATTTACTTTACTCATGTATTTATGTTTT58424455AAAATACAAGCATAATTTTTTATTTAAATCTAACCAAAATTTTATAGCC
chr2:69769320-69769338
TTGATTTTGCAAAATATGAAATAAGACTTT69769320AAAAACCAAGCATCATTGTTTACTAAGTATTTAAATTAAAAGTATTACT
chr2:73492230-73492248
CCCCCCAGATGTGGCATCCTTGTGCAACAG73492230ACAATCTGAGCATACTTGTGCCACTGCAGCCCTGCCCTGTCACAAGAGT
chr2:76696578-76696596
GTGAAGGAAACTTAGAGTTCTTTTTTCTTA76696578AGAATCCAAGGATAACTGTGAGAACAACATATCCTAGACATTTCGGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACAATCCAAGCATAATTGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACAATCCAAGCATAATTGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.816 | 6.806 | search_plus_done; http://172.18.8.78:28018/match?q=ACAATCCAAGCATAATTGT&k=3&no_gap=1&offset=0&limit=50
6.828 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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