GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 20:57:14, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:24081867-24081885
TAGCATAGTGCCTCACACTTCGCATTTTTA24081867AAATTTAGGGAGTTATTTTTTTCCTAGAATTGTGGTATTTTAACATACT
chr1:30134870-30134888
TCTTGGATGTTTACATTCATGTCTTTCATT30134870AAATTTAGGAAGTTTTCTGACATTATTTTTTTCCAATATTTTCTGTGCC
chr1:37882264-37882282
GGAGGTCAGAAAGTTCCCCCTGATAAGGTG37882264ACATTTAAGGAGTGACCTGCCAGAAGGCGAAGCAAGCCATGTAAATACA
chr1:46224037-46224055
TTTGAGACCTGTAACCCTTGTTCCCTCAGG46224037AAATTTAGGAAGTTAACTGAAATTGCTGTTACTTGATCCTTGTTATCTC
chr1:52687800-52687818
TTTGAGACCTGTAACCCTTGTTCCCTTAGG52687800AAATTTAGGAAGTTAACTGAAATTGCTGTTACTTGATCCTTGTTATCTC
chr1:55872054-55872072
CTCACACTGCTTCTATCCCAGCCCTGACAC55872054TCTTTTTGGGAGTTATCTGCCTATATATTCATCTCAGACCTTGCACATT
chr1:60808984-60809002
AACGTAATCTGTAGCTTTTATATTTGTCAC60808984ACATTGAGGCAGTTTTCTGTATTATTTTCCTAAATACTAATTGTGAAGG
chr1:65936541-65936559
ATATTTTGTAATAACTAGGTAATTCTAAAA65936541ACATATAAGGAATTATCTGAAGTTAAGTGTGGTGAGTGAAGTGGATGAT
chr1:75291582-75291600
GCTGAGAAAGCTTCATGGACGAATTCAGGG75291582ATTTTCAGGGAGTTATCTGTTTAGCTAAAACTGGAAGCCAGGTCAGCTG
chr1:82497076-82497094
CAATATTTGTCTAGTTTAATGTACTCTTGG82497076AGATTTAGCGAGTTATCTACAAGGCTTGAATCAATTCTGATTGGTTTTC
chr1:88628873-88628891
ACATTTGTGTAAAGCAAATACATAAGCAAA88628873ACCTTTAGAGAGTTATGTGCATGAGTCCCTTTATATTTTGTATATTGTA
chr1:93325726-93325744
TTTTAAGAACTAGTTGAGGCTATAATCTTT93325726ACCTTTAGGGAGGTACCTGGAGCTAACAGTTTTACAGTTAGAGGTTCTC
chr1:101629523-101629541
TGTTTTGATTAGAAGAACATTGAACAGCAA101629523ACATTTAAGGATTTGTCTGACTGAATACTGACTTAAAGTTCTGATCTCT
chr1:101985290-101985308
TTCCTGTTCCTGGATATTTATCTCTTTCTC101985290ACATTTAGAAAGTTTTCTGTTATTGTTTTTTTCTCTTTGAATAAGCTTT
chr1:108123911-108123929
AGGGAGGCCACCTTGCTTAGAGAGACCATC108123911ACACTTAGGTAGGTATCTGGTTATTTTGCATGTGTATGACACCTGGCTC
chr1:109705274-109705292
CAAAGGGAATAACAAGAAAAACCAGGCACT109705274AGATTTAAGGAATTATCTGAAGAGTTGGAAAGGAGTTTGAAGATATTTA
chr1:113915739-113915757
TTAAAATTTTACCAAAAGAACAAAGACTAA113915739ATATTTAGGTAGATATCTGCAGATACTTATGTTGTTTAAAACAGCAGCA
chr1:147026087-147026105
TCCAGGGAAGAACAACAGACAGTCTCAAAG147026087ACATACAGGGATTTATCTGTAATGAGAAACTGAAAAGAGAAGGACATTT
chr1:158339783-158339801
TGGGTGTTGTGGCTCATGCCAGTAATTCCA158339783GCATTTAGGGAGGTAGCTGAAAAGATAGCTTGAGCCCAGGCATTCCAGA
chr1:164420530-164420548
AAAAAAAAAATTAATACAATTGTTTATTCC164420530CCATTTAAGGAGATATCTGAAAAGACCAACTCAATATCATTCACTTATA
chr1:165222451-165222469
AACACATAAACGAATAGATAAATCATATCT165222451ACATTTAGGGATTTACCTTTAGGAAACAGGATAAAAGAACAATACAAAG
chr1:165905620-165905638
TTGTTAGCTGTTTCCTTGTACATCGTTCTG165905620ACATTTAATGAGTCATCTGTGGAGAACAAAAATGGAGGGCAGGGGGCAA
chr1:167694029-167694047
AGGTGAGGAGAAAGTTCTGGTTGGAAATGG167694029AGATTTAGAGAGTTATGTGGCTAATAGTTAAAGCTTGGATTGTTTGGAT
chr1:169418113-169418131
CCTTTTTTAAATTCACTTATCTGTTTTATT169418113TCAGTTAGGGAGTTTTCTGTTTCCCTATCTTCTAGCTTAGTGGATTTTT
chr1:173120936-173120954
AGAAGTCCGTCTGAGTGACTTACAAGAAGA173120936AAATTTAGGAAGTAATCTGTCCTTTATTCAGGGATAGAACACAATGTCA
chr1:200540149-200540167
TTTAAACAGGGAAGTGATTTAGGTAAATAA200540149ACATTTAAGTAGGTATCTGCTACACTGTGTACAAAGCATAATACCTGTG
chr1:204523443-204523461
ATATGGCTTTAGATACTGTGAATCTGTTTT204523443CCATTTAGTCAGTTATCTGCTTAAATTGTTCAGAACTATATCCTAACGA
chr1:224315705-224315723
GAAATTGAAAAGAACAGTTTTCCTTAATAC224315705CCTTTTAGGAAGTTATCTGGTTTTTAATATTAGAATATTAAAGCCTTCT
chr1:229297302-229297320
TCCAATTTTAGAAACATAACCACATTGCAA229297302ACATTTAGGTAGTTAAATGAATCTAAAGGAAATTTTTTGTTAAGTTAGC
chr1:229460740-229460758
TTTAAAACAAAAACCTTATAAGAATATCAA229460740AGATTTAGGGAATTATCTTCATAAATAACCAAATGTCTATGGCTTCAAC
chr1:239921854-239921872
CATAGGTGTAAATGATTCCAAATGTATCCA239921854ACATTTTGGGAGTTTTCTTCATGCTTTATAATTTTTGAGCTAACTGAAA
chr1:242830454-242830472
GTATTCTATTTTGGTTTAATATTCTAAATT242830454AATTTTAGGGAGATATCTGAAATCCCAGTCTCAAGACTAGCCAAGTGAC
chr1:247362125-247362143
TAAATGTTTAATAAAAAATAACAGTTTCTT247362125ACATTTAGGGAGATGTCTAGTGTTCTTATAAAATTACTGAGTATAAATT
chr2:3086719-3086737
GTTCATTCGTTTGTATGTTTCTGGCTCCAG3086719ACATTTAAGGAGATCTCTGCCAAATCACTCACAGATCACTAAAATAGTG
chr2:11859729-11859747
CTGTGAGTTTTAAATTCTGAAGTTTCCTTG11859729AAATTTAATGAGTTATCTGGAGTAAACGGAAAATAAATGCATGTTTGTC
chr2:25100365-25100383
GGTCGCTCCCCTGAGGACAGCGGACAGGGT25100365ACATTTTGGGAGTGATCTAGAACATCAGACAGAGCAGACCAACAGGCAG
chr2:25737070-25737088
AAAGTTACAGAAAGTATCTCTGAGAAGCTA25737070ACATTTAAGGAGAGATCTGAATAACATAAACAAATAAGCCATGTGAGTA
chr2:28740019-28740037
TGGGCTTGTTATCTCCATGAACCTTGAAGC28740019AGATGTTGGGAGTTATCTGAAGGAATCTGGGTGAGGTCTTCCCAGAACA
chr2:35815591-35815609
CACTTTTGAAGGCACATATACATTAACTCA35815591ACATTTAAGGAGAAATCTGCTTTTACTAGTTGTCTCTAATAATATACGG
chr2:39188114-39188132
CGCCACTCTTTAGACCTGATTAACACACAC39188114GCATTTAGGGAGTTATGGGTAATCTCTTCCTGCTTATGTGAAGAGTTGC
chr2:57164348-57164366
ACAGATGCACAGATTTTTATAAAATGGAAG57164348ACATTTTGGAAATTATCTGTTTTTCTCTTGAAAACACAGTTCTATAAAA
chr2:57986221-57986239
TATTATAACTCTAAAGCCAAATATACTATT57986221ACATTTAGTGAGATGTCTGTGGAGATGGAAATGAGACCATCACGATTCT
chr2:65843656-65843674
TATAGGGTACTGGCATAAACTTTTCCCCAA65843656ACATTTAGCTAGTTATCTTACACCATTTGTTGAATAATCTATATTTTCT
chr2:78178387-78178405
TTCAATCCGTGATTTTGGGAAAAGCTGTTC78178387ACATTAAGGGTGTTATCTTCTTCTGGAGAGAAACTTTCCTGGTGAGCTT
chr2:85032421-85032439
GTCACAAAAAGACAAATACTGCATGATTTA85032421ACTTTTATGGAGTTATCTAAAATAGTCAAATTCATAGAATTAAAGAGTG
chr2:86976117-86976135
CTCTATTCTTTCCTTATACTGTGCATTTAG86976117ACATTTAGAGAGTTATGGGCAGGTTCCTGAGTTTGTAATAAACTCATCT
chr2:104918909-104918927
ACTTGTAAAATCTTCTTATAAAGGTAGATC104918909ACATTTTGGGAGTTATCACTTAGCCCATTCATCTTCCTAATGGTTTAAA
chr2:110525648-110525666
TAATTTGGAGACCACTTTAACATAGCAACT110525648CCATTTAGAGAGTTATGTGCTTAACTTGATACTGGAAATAATTTTATTT
chr2:113465962-113465980
AGGTTGTTTTTACAGGAACCAAGATGTCCC113465962ACACTTAGGGACTTTTCTGTACTTTCTATATGATGTGGAAGTGCCAATA
chr2:124190625-124190643
TTCACCATTTTTTTCTAATGCCCAGTGACC124190625ACATTTAAGGAGTTATAAGAGAAATATTGTGTGTGTGTGTGTGTGTGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACATTTAGGGAGTTATCTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACATTTAGGGAGTTATCTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.670 | 6.660 | search_plus_done; http://172.18.8.78:28018/match?q=ACATTTAGGGAGTTATCTG&k=3&no_gap=1&offset=0&limit=50
6.682 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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