GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 23:37:03, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:759215-759233
TAAAGCCTGAAAATCATATTATTAGAATGG759215AGGACATAGTGACATAAAACCTCAGTGACTGTAGACTCAGGGCAACCTA
chr1:10365641-10365659
CTCTGTGGTGCTGCTTTTTTCCAATAGTTG10365641ATGAAATAGTGAAATAAAAGTTAACTTTGGTTGGGCTTGGAATAAAGGA
chr1:14512780-14512798
AGTGATGGTTCCTGTTACAGTAAGCAGGAT14512780ACGAAATAGTAACAAAATCATGTAAGGAAGGTTGGGGTGAGGATTCGGT
chr1:23459478-23459496
CAGGACTCAGAAACTGAACCACTAAAACGC23459478AAGAAATACTGACATAAGAAGTAAGGAACCCAAGGCAAAAACCTGGGCA
chr1:34696085-34696103
ATAACTCAATGAAAGTAAACCACTATTGCT34696085ATTAAATAGTGACATAAAAGCCAAGATCTATTATAAAAGGCAAGAAGAA
chr1:60055623-60055641
AAGAAATAACTAAAATCACAGCAGAACTGA60055623AGGAAATAGAGACATAAAAAACCCTTCAAAAAATTAATGAATCTAGGAG
chr1:68453485-68453503
AAGTAGTATAGATAGGGTCCAGCCTATGCC68453485AAGAAATAGTAAAATAATAATGAATTCTCCTGTCCTGAGCATGTACATT
chr1:70645765-70645783
ATCAGAAAAAAAAAAGGCTAACCATCAACC70645765AAGAAATAGTTACAAAATAACAGTTTTTTTATTAATTTATTTTATTTTA
chr1:83987862-83987880
TTAATGAAATACTTATTTAGACTTGTCATT83987862ACGAAATAGTGACTTGATCTGTTAGAATAATCAAAAATGTATGTTTACC
chr1:88058445-88058463
TGAGACAGGTAGAAGAAATGGTTGCTTTCT88058445AAGAAATTGTGACATAATTAGAAGGGGCTATACCAGACTATAGTGAGCT
chr1:92816074-92816092
CTTAGATCTGATTTTGTTCCTGGAAAAGGT92816074ACTATATAGTGAAATAATACAGAGTTGAACCTGATTTTCTTAACTAAAT
chr1:95033508-95033526
TAGAGGCTTGTAACCTACATGGAAGATGTT95033508ACGAAATGATGACAGAATAGAATGGGCCTGTGAGGCTGGAAGGAGATAT
chr1:97722736-97722754
AAATTATTATAAAATTATGGAATGTACTCA97722736ACAAAAAAGTGACATAATTAAAAAAATAATAGGTTGGATAATATGAAAA
chr1:103917524-103917542
AAAATCTGATGGAGAAACAATTGTATTTTA103917524AAGAAATAGTGACAGAATACTTTCCACAACCACAAAATACCCAAGTCCT
chr1:105998912-105998930
CAGCTACTTAATGAAGAAAAACAAATAACC105998912AATAAATAGTGATATAATATTTGAACTCTATGCTATCCTAGATTCAGGC
chr1:111956339-111956357
GGCTTAAAGACTTGGAGGCTACACTTCCAA111956339AAGAAAAAGTAACATAATAATAGGTATGGCACCCACTCTGTGTAGCACT
chr1:115466340-115466358
GATTATTTTACTATTGATATCTATATCTAG115466340AAGAAATAGTGGCATAATTCTGATTTTCTTTTAACGTGTTAAATATTTA
chr1:117820971-117820989
TAAACAATAAAGGAATTTAAAGCCAGAATT117820971ATGAAATAATGAAATAATATAGTGATAACTTTGGGGACAGGAGTGAGGG
chr1:118656565-118656583
AAAGGAAATCTACAGTCTACTCCTATGATA118656565AACAATTAGTGACATAATAAGTGGTAAACAAGTAAATTGACGCTCTTTA
chr1:150292760-150292778
AAATAATGGAATTTTTTCCATTTCTCATAT150292760AAGAAATTGTGTCATAATACTGGACAATCTTTTTCCAAACTATCTTTGT
chr1:152292742-152292760
AAACCAAGTAGTAATATTGTAGAGATGTAA152292742ACCAAATAGTTCCATAATAACTCTGAATATAAATAGAGTAAATATGCTA
chr1:153033533-153033551
CAAAATGCTAAAGTAACACATTGTTAATGA153033533AAGAAATAGAGACAAAATATCAATTTCAAGTTGTTTATGGTTAAGAAAG
chr1:154090445-154090463
ATGTAAAACTTGACTGGTGAAATAAAGTTT154090445ACAAAATAGTAACATAATATAATAAATTATTTTTGGACACATTAGAAAC
chr1:158855481-158855499
AAAGTTAAATTTAAGTACAAATGATTAAAA158855481TGGAAATAGTGACATAATCAGGCACACAGACATATATATGCACGTAAAT
chr1:165782913-165782931
AATGCTAACAATAAATCAACAAAAAGGAAA165782913TCCAAATAGTGACATAGTATTAAAAAAAAAAACACCAAAAAACGGAGGC
chr1:168939664-168939682
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTC168939664ATGAAATAGTGACAGAATCCCCAAACAGAAGTCTCCCTAGGCAGGGCTC
chr1:170211753-170211771
ATTTACAAATGATTAATTCACAGTGTTGTG170211753AAGATTTAGTGACATAATATTTTAATATGTAAAATAACTAGGCCTATTG
chr1:173126046-173126064
AAGAAATAACTAAAATCAGAGCAGAACTGA173126046AGGAAATAGAGACATAAAAAACCCTTCAAAAAATTAATGAATCCAGGAG
chr1:176060979-176060997
GCAATAAATGTAAATGGAAACAATCACTAA176060979TAGAAATAGTGACATAATAGATTTAAAATAAAGGTATGCTATCTGCCAA
chr1:176659741-176659759
TATTATTTTTTCATGTCTTTGAAGAACTTG176659741AAGAAATACTGACATATTAAGGTACTTTGTTCACTGAATTCTCCTCTAC
chr1:177136473-177136491
TCTCAATCATCACCTTTGTGTAGAGGCATA177136473ATGATATAGTGAAATAATAGAACTGGATTCAAGACTTAACTTCATAATA
chr1:179006530-179006548
TTTAACCTGCCCTCACTTAGAATCTGCAGA179006530AGGAAATAGTGAAATAATAGAACCCTTCAGTTCCCTTAATATGAATTTA
chr1:185256568-185256586
CAGGAATTGGAATAATTCCTCTTGGAAAAA185256568AAGAAATAGGGACATAAAATATTTGTACTATCAGAGGAAGAAGGGAAAG
chr1:185509844-185509862
AATAAAGTAACACTTGAAAAAATGCTTAGG185509844ACATAATAGTAACATAATAAATGATATTATCATTTTGATGGGGTTGGTT
chr1:188686350-188686368
TGTTCCAGAAAGAATATAGTCTTTTATTCT188686350AAAAAATAGTGACATAAAATTACGTATATGTGTGTGTGTGCGTGCATAC
chr1:193826629-193826647
ACCAAAATGTTGAATTAACTACATTCTCAT193826629TCCACATAGTGACATAATATTGAACTATCTATGTGACTGAAATTTGCAG
chr1:196056379-196056397
AAAAAAAAGTTTCTTTAAGTCACATTTTAC196056379ACGAAATGGGGACACAATAACAACTTAAACAGATTCTAACAATTTGAAA
chr1:196887392-196887410
AAACATGAATAAAAATAACATACAGTTAAA196887392AGGAAAAAGTGACATAAAATATTATGCAAAAACAGGGGATACCATTGAA
chr1:197030626-197030644
TGTACATGATCTTAAATTCTTCTGTAATAA197030626AGGAAATAGTGACATATAAAGAAAAAGCTTCTTTCATTTTATTCCATTC
chr1:200690996-200691014
TAACATTTTCAACTTGATTAAAGATGTCTT200690996ATGAAATATTGACTTAATAACAGTATTTTCTTCTTCTTTTCTTCACAGC
chr1:209167932-209167950
AAGAAATAACTAAGATCAGAGCAGAACTGA209167932AGGAAATAGAGACATAAAAAACCCTTCAAAAAATCAATGAATCCAGGAG
chr1:210285771-210285789
TAGTGGCTTGTAACCTACATGGAAGAGGTT210285771ATGAAATAATGACAGAATAGAATGGGCCTATGAGGCCGGAAGGAGATAC
chr1:215101419-215101437
TTACCAATTATATTTCTAATGATATCTAGA215101419ACCAAGTAGTGCCATAATATTTCTAACAGTATTTAGAACCAGGTGATGC
chr1:215449666-215449684
AGAAAATATGAGTTAATACACTTGAAAAGT215449666ATGAAATACTGACATAAAAGGTGATATTTTTGCTTGCATATACAGTTGC
chr1:218740614-218740632
TTCCCAGTACATTTGCTAATTACAAAGGGA218740614AAAAAATAGTGACATTATAGTCCGAAGACTTGGCAGATACCACATCAAC
chr1:222385504-222385522
ATTTTTTTTTGCTCATTCTACTCAGCCACT222385504AAGAAATAATGAAATAATATCTTTTACAGCAACTTAGATGGAACTGGAG
chr1:222605731-222605749
CCCTGATAATTCTGCCTGTTCCTGCAATTC222605731ACCAAATTATGACATAATATTTGCACAGGACAAAGGGACATAAAAAACT
chr1:233894333-233894351
TACTGATCCTCTAAGAATTTATTTACTGGA233894333ATAAAATACTGACATAATAGTGTTACTATGCCTGAATAATTACAAGATT
chr1:247970469-247970487
AATTGAAAGCAAAGTAAGTATAAACGCCAT247970469ATGAAATAGAGACATAATCAACATTCAAAGGAGCATAAAATTCACAGAG
chr1_gl000192_random:234823-234841
AAGAAATAACTAAAATCAGAGCAGAACTGA234823AGGAAATAGAGACATAAAAAACCCTTCAAAAAATCAATGAATCCAGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACGAAATAGTGACATAATA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACGAAATAGTGACATAATA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.425 | 5.414 | search_plus_done; http://172.18.8.78:28018/match?q=ACGAAATAGTGACATAATA&k=3&no_gap=1&offset=0&limit=50
5.436 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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