GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 05:24:46, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:17235522-17235540
AAAAAAAAAAAGTATCTTTTGGCAAAGGAA17235522ATGATTTCTGACAGGTTTTGCACTTAAGACACTCAGGTGTGAGGAAAAC
chr1:19791095-19791113
TGTAAGCCACCGCACCCGGCCCTATCTGTG19791095AAGATTTATAACAGATTTACTCTCAACATCCAAAAACTGGAGGCAACCC
chr1:42970414-42970432
CAATTATTAATTCTTTTGTGACTTCCACAG42970414ACCGTTTATGACATGTTTAAACTTTCTGACTTTTCCTAAACATCCCTCT
chr1:43551174-43551192
TTTCCTAAGCTAAATAAATTTACTGAAAAA43551174AGAATTTATGGCAGGTTTAAAGGATTTGAACTGTCAGGCCTCTGAGCCC
chr1:51924499-51924517
AGATTTTGCACCAATATTCTTACCACAAAA51924499ACCATTTATGAGAAGTTTATGTGTAGGGTTTGACGATGTTTCAAAGTAT
chr1:52613167-52613185
TATCGAGACATTTCATGTAAGTGGAATCAT52613167ACGATATATGACTGGTTTCTCTTACTTAGCATAATAGTTTTAGGGTTCA
chr1:59332919-59332937
TTTTGGTATTATCTGTCAGATTTTAATATA59332919AGGATTTATGATAGCTTTATAAAAAATGAGATAACTTTTCATATTTCTC
chr1:73281274-73281292
TTTTCATAAATTCTTTCGTGACTTACACAG73281274ACCATGTATGACATGTTTAGACTTTCTGACGTGCCCTAAACATCTTTCT
chr1:88033589-88033607
TGAAAATATCAAAAGTTAAAAGTATTGTTT88033589TCAACTTATGACAGGTTTATCAGGATGTAACCCCTGATGTAACAACCCC
chr1:88049290-88049308
CCTTAACCAAAGATGCCACTGTGGTACTGC88049290ATGATTTGTGACAGATTTAATTTTTAAGCACTGGGAAGCACACTGCAAA
chr1:101993953-101993971
TCCCCTGTGCTTCTCAAGTAGCCTAGAATG101993953ATGATTTATGATAGGATTAAAATTTCTACCTAATTGAGGGCATGTTTTG
chr1:102893912-102893930
GCTGTGGAAAGTTTCAGTTTGTTAAATTGA102893912AGGATTTCTGACAGATTTAGAATAAGTAAAAGAATGGGTGTGTTTATTA
chr1:160837592-160837610
GTGCTAGTCTCGTGATAGTGAATAAGACTC160837592ACGAGATCTGACAGGTTTATCAGGGTTTCCACTTTGCTCCTTCCTCATT
chr1:180212603-180212621
CCTGTTTAGCCTTTCTAAACTGTAAAAATA180212603ATAATTTATTACAGGTTTAATTAAGAGGCTTATGTTGTTGCTCTTTGAA
chr1:202549888-202549906
CAATGCCCTGTTCTTCCAAACCCCTATCCC202549888AAGTTTTATGACAGTTTTAATTGAAGCATGATTGTGGTAATTCGAGCCA
chr1:217460386-217460404
TTTAAGGAATGCATTTCGGGAAGAACAAAA217460386ATGATTTATGAAAGGATTATCTGATGTTCAAAAAGAAATACCGAGAATA
chr1:217570161-217570179
GCTGGATTCTTGATATGAGACAAAACTGAC217570161AGGATTTATGAAAGGTTAACTATGGACCATAAGAAAAAGCAAGGAATCA
chr1:226499122-226499140
CACCTAACTCTTCAATAAGTTTCGTTATTG226499122AATATTTATGACAGGTTTTACAATGATTGGCTTACTTGATTCTCCCAAC
chr1:248750351-248750369
TCTGTAACCACTGCGTTAGCTGCATCCTAC248750351ACGTTTTATGTCATGTTTATATTATTGTTCTGTCAAAGGCCCACCTGTG
chr2:9097392-9097410
AAGTTTGAAAAATATACACTACTCCATGGC9097392ATGATTTATGAAAAGTTTAAATAGTATCACCTGAGAAACCTTAAAAAAC
chr2:17111226-17111244
ATGGAGAGGAAGATAGAGAGGTGACCATGC17111226AGGGTTTATCACAGGTTTACTGTAGACTGAAAAGGGTGATGACTTTCTT
chr2:37603989-37604007
CCCAGGCTCCTGGCAAGACATCCAGCAGCA37603989ATAATTTATGACAGTTTTATAGAGAGCTGGGATGAAAGGACTGTCTTGT
chr2:79226716-79226734
AAATCAGAAAGTAAAGTCCTAGGCCTGCAC79226716AAGCTTTATGACAGGCTTATAGCACCCTCTTGTGTTTACTTCTGAGAAA
chr2:84381333-84381351
TTGTGAACAATAATTTTACCTTCGAGGCAT84381333ACCTTTTATAACAGGTTTATTGAAATATCATGCACATATTATACAAATG
chr2:102535808-102535826
AAAGATTCCAAACTAAAAATAATTAAATAT102535808ACTATTTATGACAGCTTAAAAAAACCCTATGGGTAATTCTAATGAAAAA
chr2:111892613-111892631
GTGCACTCAGCATCTTGAATCTGGAGTTTC111892613ACGTTTTATGCCAGGTTTGGGAAGTTTTCAGCCATTATGTCTTTAAATA
chr2:124878096-124878114
AGAGAAAAGGAAGTTAATCTTGGAGAAAAC124878096AAGAGTTATAACAGGTTTAGAAACTATCTGGTGTAATCAGCTAATTTTA
chr2:133773861-133773879
AGCTTGGTGTGTGAGAGCACATGAAGTCTG133773861ACGATTTATAACAGATTTTGCAAATGGTTGGTAATACAGTGACAGTGGC
chr2:137948509-137948527
AGCGGACTGCTGCGTGTCTCCTTGGGGCAG137948509ACCATTTATCACAGGTCTAAGCCAGGACTGAGAGACGCTGCAATTTCAC
chr2:145284287-145284305
TACGTGAAGAAAGAAAATGAAAAGCATTTT145284287AGGATTTATGGCTGGTTTATGATTTTTTCGAACTGTTCAAAGGATGCGT
chr2:151034955-151034973
ATTAAGCGATGCAGAACTGTATTTAGTTTT151034955AGGATATATGACATGTTTATATCCTAGCGGATATAGGGTGTCTAGTACA
chr2:161090493-161090511
AGTTTGAGTGGAAGAATGGTGAAATCATTA161090493ATGATTTATGAAAAGTTTATGGAGACAATGCACCAAAGAAATCAGCAGT
chr2:163142637-163142655
CAGAAAAATGTCTGAAGGAGTATGAGCACT163142637AGGAATGATGACAGGTTTAGAAACCATGTTATATGGAAAACAGTTAAAG
chr2:182969994-182970012
GAAGATTTGAGGAGTGAATAGCATTCTGAG182969994ACAATTTAAGACAGATTTAAAGAGGGAAATAGAGTAGATTTTTCAGGAA
chr2:214076617-214076635
TTTTAATAAATTCTTTCATAACTTACACAG214076617ACAATGTATGACATGTTTAGACTTTCTGACTTGCTCTAAACATCCCTCT
chr3:9369499-9369517
ATTTCATAAATTCTTTCATGACTTACACAG9369499ACCATGTATGACATGTTTAGACTTTCTGACTTGCCCTAAATTCAAACAA
chr3:34331892-34331910
GTGCTAGAATTTACATTATTAATTAATTCT34331892ACCATTTATGGCAGTTTTACTATTTACTGGCCAATATGGAGATATTTAC
chr3:35697863-35697881
TAAAACTGTCAACACAAAAATGTGAAGACA35697863AAGATTTATAACAGCTTTATTTTAATTGCCCCAAATTAGGAACAGCTCA
chr3:35824168-35824186
TTGTATGCAACCGTTGATGTTGAATGTGCT35824168ATGAATTATGACAGGTTTATAGATTTTCTTACTCTTTCCCAGGTTTTTC
chr3:41735573-41735591
TGATACTGGTTTCAGTGAAGCAATTCCATA41735573ACAATTTATTACAGGATTAGCAAATGAGAAAATGTGCTGATGATGCTGG
chr3:44677384-44677402
GATGGTTCCCAGTTCCTCCACCAGGAAGGA44677384AAGATTTATAACAGTTTTACTGAGGTATATTTAACATACCGTAAAATTC
chr3:55357748-55357766
CTCCCCTCGTGTGACACTCTCTGACAAAGG55357748ACTATCTATGACAGGTCTAGCAGCAGCAGAGGTTATGTCCAGGCCCTGC
chr3:74642777-74642795
TGTGCCAGAAACTGTTATTTTTAATTTCAC74642777AAGAGTTATGACAGGTTGATTATACAGATGAGGAAACTGAAGCTTAGTT
chr3:87472331-87472349
ATTTCCTTTCTATGCCATGCATTTTCAAAG87472331ACGATTTATGATAGGTGAAGAGCAAATTAATAATCTTCTTAGAGATCAT
chr3:88730163-88730181
GGATCAAAACCAAGAATGAAAGGTACACTT88730163ACGATTTATGACAGATGTTTATCATGTGATTTTCAATTTAAAGGAGGAA
chr3:102486020-102486038
TGGACTTTGCCCACATCTATTAGAGGAATC102486020ACCATCTATGACAGGTATACACTTATAAAAATGTATTTCTTAAATAATA
chr3:110098722-110098740
CTACAATTCAAAGGAACACATTTATCTAAA110098722AAGATTTATGAAAAGTTTAAGTGCCAAGAATTGTGCTACCTTAGGGAGG
chr3:119168894-119168912
GAAAACATATTTTAATGGAAGGAAGGAAAG119168894ATGATTTATGATAGGTTTTATCCATCTAATTTAGATATTTTAGGAGGAA
chr3:126969079-126969097
CCTTCATGAACCTTATCATGACTTACAATG126969079ACCATTTATGACATGTTTGGATTTTCTGACGTGTCCTATACTTCTCTCT
chr3:129195935-129195953
GGAGTACATGAATTTCCTTAGTGAGGGAGG129195935ATGATTTATGACAGGTTGGAGCCAGGTGGTTGACCTGCATGGGTCTTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACGATTTATGACAGGTTTA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACGATTTATGACAGGTTTA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
4.264 | 4.254 | search_plus_done; http://172.18.8.78:28018/match?q=ACGATTTATGACAGGTTTA&k=3&no_gap=1&offset=0&limit=50
4.276 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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