GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 11:13:44, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:1660134-1660152
AGAAGCCGATGACCCAATTCGGAAGGTGGT1660134TCAAGTGTTCTGTTTGTTTACAAAGGCACAGACCACGACCATGGACACA
chr1:16874080-16874098
GAGGAGGTCTAAAGTGTAGCCACAGGTTCA16874080ACTACTTTTCTGTTTGTTTCCCAACCTCGATTAAACTCACTAAATTTAG
chr1:23552869-23552887
ACAAAAATTAGGACTATTTCTGAGAAGTTC23552869ACTAGTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTGAGACAGA
chr1:24980116-24980134
TGTCTGGTTATTTTTCAAAACCCCAACTGT24980116ACCAGTGTTCTTTTTTTTACATCATTCTAAAATGAGCATAAGATAAAAT
chr1:29160441-29160459
GAAGACACACACAAAAGTAGGTGGTCACAA29160441ACCAGTGTTCTGTTTTTTTGTTGCCCAGGCTGGAGCGCAGTGGTGTGAT
chr1:29790957-29790975
TGTTTATCTCATACATTGTAGTTTTCACTT29790957ACTAGTGTTCTATTTGATTTTGCTTATAGCTTCTATGTCTCAACTTTTT
chr1:36396153-36396171
AAACATGGAAATTACTCGATCTGATGTTTG36396153TGTAGTGTCCTGTTTGTTAGTCATCTTTTCCAAACTATAATACATTTTT
chr1:50032791-50032809
ACCCTCCAAGCCAGATGCAGGATATAATCT50032791CCTAGTGTGCCGTTTGTTAAGACCATTGGAAAAGTGCAGTATTAGGGTG
chr1:53746119-53746137
AAGACCATGTCTCCATAGAATCTAGCCATT53746119ACTAGTGTCCTGATCGTTATCCTTTCCTCTCCACCACCAAGCCCCACGG
chr1:55174875-55174893
AGACAAGGGTCTTCAACTCAGTTCAGTTGT55174875ACTAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGATGGAGTCTC
chr1:58650269-58650287
AACCACTTGAAATGCAGTAGAATCAGCTAA58650269AATAGTGTTCTGTTCTTTAATCCAGTCTGCTGCTTCTCCTGTCAATTGG
chr1:61921668-61921686
GAACAATTCCGAAAATGGCAAACTACTACT61921668ACTACTGTTCAGTTTTTTAAAAGTTTTGAAATGCTGCACTTACATTTAA
chr1:62399512-62399530
AGCACTCCCATCCCCCAACCCTAAAATGAA62399512ACTTCTCTTCTGTTTGTTATTTCTCTTCCTGACAATGGATCAACAAACA
chr1:68559108-68559126
ACCCACTGAGTCAGGCGCAGGATATAATCT68559108CCTTGTGTTCTGTTTGCTAAGACCATGGAAAAGTGCAGTATTTGGGTGG
chr1:73010784-73010802
CCTGAAGATTTTTATGAAGTTAGCATCTCA73010784AATATTGTACTGTTTGTTAGATTAAGAAAGTGTTAGATTAAGAAAGCGT
chr1:73156159-73156177
CATCTTCAATTAGTACAGTCCAGGCAGTTA73156159ACTACTGTTCTGCTTGATATTCATGAACATTTTAGCTCTCCATGAAAGT
chr1:95629875-95629893
ACCCTCTGAGCCAGGCGCGGGATATAATCT95629875CCTGGTGTGCTGTTTGTTAAGGCTGTTGGAAAAGCGCAATATTAGGGTG
chr1:97562632-97562650
AAGGGCTGTAGGTTCTGGCCTTCGCATTCC97562632ATTAGTGTTCAGTTTGTTCAGTTCATACTTTTAGTGGCACAAAAATAAT
chr1:97647950-97647968
TGATAATTTTGAACCTTTGAACTTTCAGGG97647950ACTGGTGTTTTGTTTTTTATTTTCCTTCCTCATGCCCTATGAAATGAAC
chr1:106602830-106602848
TTAATGTAAGTGCTGATAAGACTCAAGACT106602830ACTAGTTTTCTATTTGTTTTTTATATATCTATGTCTCTCTTGTTCCTTT
chr1:112011416-112011434
TAAATTATGGTGTTTAAAATATTTTATCCA112011416ACAAGTGTTATGTTTTTTAACAAGAGGATTTCCTTACATACCTAATCTG
chr1:144947952-144947970
TGCAAGTTCCATTTATGGTCAGTGCCCTAA144947952ACAGGTGTACTGTTTGTTATCTTTTATACAGTATTTTTACTGTATCTTT
chr1:148621325-148621343
CAGTCCTCAGCTTCAGACAATGCCGGAGTC148621325ACTAGTGTTCTGTTTTCTTTCCTCTATCATTCCTATTCAAAAATTCTAA
chr1:148783354-148783372
CAGTCCTCAGCTTCAGACAATGCCGGAGTC148783354ACTAGTGTTCTGTTTTCTTTCCTCTATCATTCCTATTCAAAAATTCTAA
chr1:148908501-148908519
ATTATTGGCATCGGCATAGAATCTTGGTTT148908501TCTAGTTTTCTGTTTGTTTTTGAGACAGGGTCTCACTCTGTTGTCTAGG
chr1:149529814-149529832
CAGTCCTCAGCTTCAGACAATGCCGGAGTC149529814ACTAGTGTTCTGTTTTCTTTCCTCTATCATTCCTATTCAAAAATTCTAA
chr1:152320239-152320257
ACAGTAGCTTTTTCACTAGCAAACTAACAG152320239ACTAGTGTTATGTTGATTACATAGTACGATTTAAAGTTCATAAAGTACA
chr1:161915416-161915434
TTCAACAAAACTACAAATGGGATCCTAATA161915416ACAAGTTTACTGTTTGTTAATTTGTGTTAGATATAGGCATACTGTCATA
chr1:163751387-163751405
CTCAGCAAAAGAGATTTCTAGGACAGTGAA163751387ACTATTATTCTGTATGTTAATGTAATAGTGAATACATGTTACACGTTTG
chr1:163934184-163934202
GGTTTTATTAGTTTCTTCTTTGATAGTTTT163934184ACTAGTTTTCTCTTTGTTTTTTGTTCAATCAGTGTTAAGTTGTCATCAG
chr1:164919072-164919090
AAGGAACAGAGGAGATTTTTCTGAGGTGCT164919072AGTAATGTTCTGTTTGTTGATCTAGGTGCTGGTAACATGATGTATTCAG
chr1:166581570-166581588
CTATCATAGTCCCTGATTGGTAATCAACAT166581570ACTGGTGTTCTCATTGTTAATAAGAATAGTGAAAATTTAGGGCAACAGA
chr1:172074776-172074794
AATTGAAGATTAAAATCTTGTCATATCCCA172074776ACTAGAGTTCTATTTGTTGATTGGGTATGTGTAAAGCTTACAAATTAAT
chr1:172383056-172383074
GAAAGATTCTGGATGCGAATCATGCTGTAT172383056ACCTGTGTTCTGTTTGTTTGTTTTGTTTTAACTGCATGATTTTGAAGTA
chr1:178273125-178273143
GAGAAATATAAAGGTGGATTCTGGAGTGCC178273125AGTGGTGTTCTGTTTGTTGACTTGGGTAGGAATTACACAGGTGTGTTCA
chr1:183128009-183128027
AGTGATTCATCACATCTAATATATCTAGTA183128009ACTAGTGTACTGGTTCTTAACAATTTTCCCCCTGGTGTTAGCTTTCACC
chr1:184590041-184590059
TGTATTTTTTTAATGTGTTTGATAGCTTTG184590041ACGAGGGTTCTCTTTGTTACTTTCAGGGGAGGGCATCCTATTAAATGCC
chr1:185404357-185404375
AATTTAATTAGCAATCCTCTATTTTGGAGC185404357ACTAGTTTTCAGTTTTTTATTATTATTACAAATGTAGCATTTTGAACAC
chr1:185711242-185711260
GTAAAAAGAACATCCAGTTTGAAACAGAAT185711242ACTTGTGTTCTTTTTCTTATTCTTGTCACTTCAGCAAATCTTTTAACCT
chr1:198929276-198929294
ACTGATAGGCTTGCTGAAAGCAGGGTTGTC198929276ACTAATGTTCACTTTGTTAAAAATGCAATATCTGCAAAGTGCAATAAAA
chr1:200358539-200358557
CATACCTCCTTTCTTTTATCCTCTTGTAAA200358539ACTAGTTTTTTGTTTGTTTGTTTTGAGACAGAGTCTCACTCTGTTGCCC
chr1:200576254-200576272
AGAACAATATATTTTAGCATCAGATGTCTT200576254ACTAGTTTTTTGTTTGTTTGTTTGTCTGTTTTGAGACAGAGTCCTGCTC
chr1:204025066-204025084
AAACAGCCTTTGCTTTCATTGATTTTCTTT204025066ACTGTTGTTCTGTTTATTATTTCACTGATTTCCACTCTTATCTTTATTA
chr1:208628412-208628430
CCTCAGACCTTTCAATTTCTTTATGCACTG208628412ATTAGTGTTTTGTTTTTTATTTTTTGCCTGTATTGTAGTCTATGTATTT
chr1:214639015-214639033
TAAAAAGCCCACTAGGAGTGGAACTTGAAC214639015ACTGGTGTTTTGTTTTTTAAATTTCTAAATATATTGTCTCATTCCAACT
chr1:217606631-217606649
AAAAATATTAACGATGAAACTCCAGAGTAT217606631AGTAGTGTTCTCTTTCTTATCCTGAGTTGTGGTTACCCAAATGGCCAAT
chr1:218614863-218614881
AAAGGCGGTACTAGTTCAGACACTTTGGAA218614863GTTTGTGTTCTGTTTGTTAAAACTGGCATCTGACACAAAAAAAGTTGAA
chr1:221724234-221724252
GGTCACGGAAGAGAACGGTGGAACCCAGTG221724234ACTAGTGTTCAGTTTGATTAGGATGAACCTGGGCACTTAGCCGTGCAGG
chr1:224191912-224191930
AAGACCTAAGAATCTAGACATTAATCTGAT224191912GCGATTGTTCTGTTTGTTATAGTTAGCCTGTACTCCCTTTTTTTGTTCT
chr1:233880029-233880047
CTCCTTAGGCCAATGCAAGTGGACTTTTCT233880029ACTTGAGTTCTGTTTGTTACAGACTGTACAGACCCAGAAGTGCACTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACTAGTGTTCTGTTTGTTA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACTAGTGTTCTGTTTGTTA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.290 | 6.280 | search_plus_done; http://172.18.8.78:28018/match?q=ACTAGTGTTCTGTTTGTTA&k=3&no_gap=1&offset=0&limit=50
6.301 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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