GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 20:35:09, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4319407-4319425
AACCTAGTGGGAGGTAACTGAATCCTGGGG4319407ACTGTTTCCCCCATGCTATGCTCATGATAGTGAGTGAGTTCTCACAAGA
chr1:25422353-25422371
AAGCCCCAACAGGGTGCAGACAGCAGCCAA25422353ACTATTTCCTTCTTCCTCTAAGATTTCTTCTGCCGTCTTAGCCCAGAGC
chr1:39071411-39071429
TCCTCAAATGCTGGGACATGGAGTTCTGTC39071411TCTACTTCCCTCATTCTATCCTTGCCCTGCCCCACTCACCACCTCCTCT
chr1:47126521-47126539
TGTCAAATGGGTGAGTTCTACATAATAAAA47126521AAAATTTCCCTCATCCTGTACAACTTTTCAATGTCTAGCTAGACATTCT
chr1:49486739-49486757
GGCATAAGGATAAAGCCCTCCCTACCAGTG49486739AATATTTCCATGATCCTATTAGGTTCCTACAGCAACACAGAGGTAGTCA
chr1:49851810-49851828
CATTCGTATTCTTTGACCCCATGATCTTAC49851810ACTATTTCCCACATCATTTCTTAAACATATAATACAACAGAAGAAAAAA
chr1:63591789-63591807
CTGGGCTACGTTTTGGCATTTTAAGCATGG63591789ACCCTTTCCCTCCTCCTATCTGACTCTTCAGAGATAAATTTCTAGGTCT
chr1:66815490-66815508
TTAGTTTCATAAGGAGTTTTAGACAAGCAC66815490ACTATATCCCTCATTCTGTTTATTTCTTTTTCATTTAAAACTTAGATTT
chr1:70172232-70172250
TGCAAGTCATTTTCACACATGGCCTTAAGA70172232AATATTTCATTCATCCTATAATGTATTTGTGTACTGTTTTTTTAAAGCT
chr1:73641107-73641125
ATCCTTTTAGAGGAGATATGAGTTAACTTG73641107ACTATTTCTCTCATTCTACCATATGACGAAATATCAGGAAGACAGCCAT
chr1:74329086-74329104
GAAAAGAACCAAACCACATGGACAAACTCA74329086TCTATTTCCCAAATCCTATTTCCTCTGGTTTCCAGTTTTAATCAGAAAA
chr1:76026612-76026630
CAATAAATACATTAACTATGTTGATAACAA76026612ATTATGTACCTCATCCTATTTAGCTACATCTGATGTAAAAGTCCTAATA
chr1:79895582-79895600
TGTCCTGTTTCCTCTGCTTGTATTCCACAA79895582ACTATTTTCCTCATCTTATTTATTGAAGCTAATCTGTCCTTAAGTGGAT
chr1:80715921-80715939
CCTCTTCCTACAATTTTTCCCACCACACTG80715921ACCATTTCCTACATCCTATTATAATGTGTTTCTTAAAAGAATGGCCTTG
chr1:85922915-85922933
CTCAACATTAATAAAATTAATCTTCACTGG85922915ACTATTACCCCCATCTTATCTCATCCTGTTCTCTGTATCTGGAAGGTTG
chr1:95213594-95213612
TTTGCAATGGGTCTCTACTTGAAGAGATAT95213594ACTATTTCCTTTATCATATTGTAAATTCCTCCAGGAAGTTTCACCAGAA
chr1:95735856-95735874
AAAATATTAGTGAGTTAGAGCAATATGTAC95735856TCTATTTCCCTCAACCCATGAACATTTTCCTATTTAATTCTTACTTGTA
chr1:100037335-100037353
TATAAATATATTTACTATCTTTCTCTCTAG100037335ATTATTTCCCGCATCCTATATTTCAACTCCAAATTAGTATTTCCTGAAG
chr1:103383758-103383776
GATTATGAAGTCTTCATCACTTATCGTGTA103383758ACTATTTACCTCATTATATAAAGCACTTGTTTAGGTACATATTTTTTCA
chr1:105688870-105688888
TTCCACTACTAGTAATGATCCTTTGTTTTA105688870ACTATTTCCATAATCCTAAGAAGAATAGAAAAAGAGAGTTTCTCCCAAA
chr1:105769426-105769444
GACCCAGTGGAAGATAATTGAATCATTGGG105769426GCTACTTCCCTCATACTATTCTCCTGGTAGTGAATAAGTCTTGTGAGAT
chr1:112684509-112684527
CCACAAGAAACTATTAATTAAGACTCTCTC112684509ACTATCTCCCTCATCCTATTTCCTTCACCGTCGCGGTAACCACTGTAAT
chr1:116733272-116733290
ATAGAGCCTTGGTTATCTTTGCCTTCACCT116733272GCCATTTCCCTCATCCTCTTATCCCTCAGCCCAACATCTGAGAAGGGCC
chr1:117071646-117071664
CTAGCAGTTTTATAGTGACTAACCATCAAT117071646ACTCTTTCCCACATGCTATTTTATTTAATTTCCTCAGCCCTTGTAAAGT
chr1:152682750-152682768
CCAAAAGTCAGAATTGGAATTCAATGAAGT152682750ACTATTTCCCTTGTCCTCTCCACTGTGTCCCAAAGGTAAGGAGCCTCTT
chr1:155835053-155835071
GGGACATTATCTTACTTGGGGCAGACAGGA155835053AATATTTCCCTCATCCAGTGAGGTTCGGGGCTCACGATAAGTGAAGCAG
chr1:157236811-157236829
TGAGGTATTGTGATTGCTGATGCATATGGC157236811ATTATTTCTCTCATCTTATTATATCTTTCTATTTTTCTGTTTTCTCTAT
chr1:159197715-159197733
CACCCTGCTTCCTTTGCTTGCATCCCACAG159197715ACTATTTCCCTTATCCTATTTACTACAGCAAATCTCTCCTTAGTTGATG
chr1:173091625-173091643
TGGTTTCCCTTTTGGCATATTTACTAATTA173091625AATATTTCCATCTTCCTATCTTAGAACTTCCATTTCTACTGTAATCACC
chr1:190610766-190610784
TAACAGAAAAATCACAAATTTTTTTCTTCC190610766ACTATTTCCATATTCCTATTCATGTAATTGTGTGTGTGTATATATATAC
chr1:192012011-192012029
AGAGAGTTTAGATTGGAGTTTCCTCATAAA192012011ACTATTTCCATCACCCCATGGTAGATGCAAAATGGGTGCATTGGAAGAA
chr1:194481888-194481906
ATGTATACATCTTATTTATCAATTATTCCT194481888AATATTTCCCTAATCGTATCCCAAAATTCATGTAAGGTATAAGAACTTA
chr1:202078153-202078171
CTGTGAACTGTTAGGCCAACAGTGGTCCAG202078153ACATTTTCCCTCATCCTCTGCAAAAAACAACAAAACCAAACAAAAACAT
chr1:204457192-204457210
TTCATTTTACAACAAATTTTGTCTGGTATT204457192ATTATTTCCCTCATCTTACGTATGAGGAAAGTGATGCACAGATAAGTTA
chr1:215231596-215231614
TGGCAGAGGTCCTCACTCCTCATGTTTGTG215231596ACTTTTTCCCTCTTCCTTTTTTCCTTTTAGGGGATACAGGATTGCACCT
chr1:225287729-225287747
AAGAAATAATGCAACTGTATAATTATAGAA225287729ACTATTTCTCTCATTCAATTCCAACAACAACAGAAACAAAACTAAAATT
chr1:226367136-226367154
CCTTGGTGCAGAGGAGAGCAGGACTATCTC226367136TCTCTTTCCCTCATCCTAGTTACCATATTTCCACCAAAGCAGCCTAAGA
chr1:227344643-227344661
TCTGTTTTCTCAACTCAGCAACACCACCAT227344643GCTATTTCCCTCTTCCAATGTCATACCTGGCACTACCCACTTCTCACTT
chr1:242411642-242411660
GTACATTAACCTAATAATGTCACACTGGAC242411642ACTATAACCCACATCCTATAGCTTAAAAACATACAGCCAATCATGTGTA
chr1:243359107-243359125
CTGGCTTCATAAATTATTACAAGACAGTAA243359107ACTATTTTCCTCATCCTATATTTTAAAAAGCTGCAAATGATAAATCTGA
chr1:245772420-245772438
ACCAGAAAATGCCTTCTGTTGTTGTCAAAT245772420ACTATTTCTCTCATCTTTTTGTTCCTTCTCTTCCCTTTTCCCCCCTTCC
chr2:73690-73708
ACACAATACCTTTTACATCTTCCCTCCTTG73690TCTGTTTCCCTCATACTATTTTCCTATTAACATTAGAGTTACAATGGAA
chr2:8804212-8804230
GTCCCGCTCCACATAAGAATAACTTTCCTC8804212ACTATTTCCCTCATACTTGACTGAAAAAAGGGAGCGGGACGGGTGCCGT
chr2:13954727-13954745
TGGTTTCTTTATCTATAAAATTCTAATAAT13954727AATATGTCCCTCATCATATGTTCCAACAGTTGAATGAGAAGATGAAAAT
chr2:28368398-28368416
CATTCTGTCATTCTTTCCCTTTCCTTCACT28368398ACTTTTTGCCTCAGCCTATTCTTTTATTTATTTGTTAGTAGTTTTATTG
chr2:28934042-28934060
ACTGTTCCTACACTTTGACTGCTCTGCAGG28934042ATTTTTTCCCTCTTCCTATATTGAACATGTGAAGGATTGCAGCCCTTTT
chr2:35779220-35779238
TTCTTTTAAGGTCTCAAATATTCCCCTTGA35779220ACCATTCCCCTTATCCTATCTAGAATTAACTTATTGGTATGGTGGAAAG
chr2:36618873-36618891
AGCCCTTTTTGGGTGGTAAATCAGGTCAAA36618873ACTAATTCCATAATCCTATTAACATTTTATTTGCTTTTTTTTCTTTTTC
chr2:37175167-37175185
AAATCAAAAACAAAATAACCATCTTCCAAA37175167ACATTTCCCCTCATCCTATAGAATGATCATCCTCTCCTCTATAATTATC
chr2:37769521-37769539
GGTAGGGATCATGGATACATAAGACCTGCC37769521TCTATTTCCCTGATCCTAATAGGAAAGAGGTTAGTTTGGCATGTCTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACTATTTCCCTCATCCTAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACTATTTCCCTCATCCTAT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.818 | 6.808 | search_plus_done; http://172.18.8.78:28018/match?q=ACTATTTCCCTCATCCTAT&k=3&no_gap=1&offset=0&limit=50
6.830 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).