GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-30 17:27:22, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:12054306-12054324
CTTTGACATGGAAGCAGTTTTAACACTGGC12054306CCTTGTGAAGCCACAATGTACCTAAAGTACTAGGCCAAACATTTATAAC
chr1:28535608-28535626
GCCTAAGGATGACTTTCTTACAGGTGAAAG28535608ACATACGAAGCCACAATGATTTAAGGAGAAACTGTCAGGCACTTTCCCT
chr1:38020724-38020742
ACCCCAAAATACGGCTCACTGACAAGCTGA38020724ACTGAAGAAGCCTCAATGTTCCTTTCCAGTGCCCATCATCTCTCCCAAA
chr1:41076814-41076832
TCTGTCCTGCCAGCCTGATTCATTTTCCCT41076814AATTAGGAATCCACAATATATTTTTAAATTTTTTTGTAGAGATAGGATC
chr1:41222107-41222125
TATCAACCTAAAAAGTCAGTTCATATATTA41222107ACTTAGAAACCCAGAATGTTACAGGTATCTCCCTAAGCTGGGTAGATGG
chr1:47755394-47755412
GCAATTTTTGTTCAAAAACTGGGGTCCACC47755394ACTTAGGAAGGCAAAAGGTGGGAGGATCGCTTGAGGCCAGGAGTTTGAG
chr1:50628160-50628178
CTTTATGCCACATGATGAGTACAAACATCT50628160ACTTAGGAAGCCAGAATATACCCTCTGGAAATAACCAAGGACTGGCCCA
chr1:54501204-54501222
TATATTTTTTGGGCCAGTTAAATTTTAATT54501204ACCAAGGAAGTCACAATGTCTCCCATCTCTTTTGGGGTTAGATACCAGA
chr1:56100774-56100792
GCCTCAAAGGCAGATTATGCATAGGAGGAG56100774ACTTAGGAAACCAGATTGTCCTTGAGAGAAACTTAAAAGATAAAGTGAA
chr1:56802917-56802935
TTATCTTAGGATATAATTATATACACAGAG56802917ACTCAGGAATGCACAATGTTTTGATTTGAGATAGTTTTATTCTCTAGTC
chr1:59045745-59045763
ATATACCCTCTTCTTGCTTTTCCAGGTATT59045745AACTAGGTAGCCACAATGTTCTATAACTAGCAGAGTTCTCTATTTTCCA
chr1:64780965-64780983
AGAGAGAGAGAATTCTCCTTGGGCTTTTCC64780965AGTTATGAAGCCAGAATGTTTTTCTGTTCTTGGGTAAAAGTGAGGTATA
chr1:72575651-72575669
AGATAACAGAAAGAAAGCACAGCTGTTCCT72575651ATTTAGGAATCCACAGTGTAGAATTTCCATTATTTATCCTGATAGGAAA
chr1:83180842-83180860
GCTCTTATTTATCTAAACCGATAACTGCAG83180842CCTTAGGCAGCTACAATGTTAAACAATTTTTGCTTAATATTTTCCACAA
chr1:88035522-88035540
TGTTGGCACTATCCATTTACAATAATAAAA88035522ACTTAGAAAGACAAAATGTGATGATAATAGTAAACAAAAAAAAATCAAT
chr1:93404165-93404183
TCAAAAAATTCTAAAAATAGCAAGAGTCCA93404165ACATAGAAAGCCATAATGTATTTTTGGAAAGTCATTCAAAAATGTATAA
chr1:93546128-93546146
TGTGAAAACCTAGCTAGGCCTGTGTGTAAT93546128ACATAGGAAGGCACCATGTGAGGTCAGTACAGAGCTAGAAATATGTAAA
chr1:94952095-94952113
AGATACCAAGTTGTTAACAAGCTACCCTGT94952095ACTCAGGAAGCCACATTTTAGTGGAGCAGACAATAAATAAACAACTAGA
chr1:100439076-100439094
TCGAGTGTTTTATATATAAGTGTGAAAATG100439076ACTTTAGAAGCTACAATGTTGCTTGGCTTCTCTATCCAGATTGCCTGAC
chr1:105912281-105912299
TGAATTAAGCTTAAAAATTTAAAACAAACA105912281ACCTAGAAAGTCACAATGTTTTAGAAATTAAGAAATAAAAATGATCAAA
chr1:120493164-120493182
ATGTAGGCAAATGACTGTCCACCACTTGCA120493164TCTTAGGAGGCCACAATGTTTCCTCAAAGCTCAAGATCCAGTCAGTAAA
chr1:153183454-153183472
TTATATCAAGCCCCTAGTGTGGGCAACTGA153183454ACTTAGGAAGCCAAGATGCCAACAGTACTCTAGTATCTATGTACACACT
chr1:156154911-156154929
TCTTTAGCATTCAGTCTGGGGCCTGTGTTG156154911TCTGAGGAAGCCACATTGTCCAGGGCTGAGTCCTGCAGGATTATTTTCT
chr1:157188638-157188656
GACAGATGAGGACATACATCAGAAGGGCCG157188638AGTTGGGAAGGCACAATGTGACAGGCACTGAGGCAGGTGGGGACAGTGG
chr1:170717089-170717107
CTGGCTGTCTAAGGTGACAACTTCTGATCA170717089ACTTTGGAAGCCACATTTTAAAGACAGTAAAGTAACAGTCAGCCTGGAC
chr1:171415757-171415775
TTGGGAGGATGGGGTAATCTTGGACTGCAA171415757ACTAAGGAAGCCACACTGGAAAGTGACTTGCCAGTATTTATGCAACTTA
chr1:178147577-178147595
AGATTCGTAACTATTTTTTTCCTCTGAGAT178147577ACTTTGGAAGCCTCCATGTAATCTTTTTTATATGAGATATTGCAAGTCA
chr1:197912673-197912691
GCCATGGAGTCTGGAAACTTCTAAGTGAAC197912673ACTTTGGAAACCACAATTTTAGATCCAAACATAAAATCCTGTCAAAGAC
chr1:210747172-210747190
AACACAGTGGCAGCAGACATAAACAATGAC210747172ACTTATGAAGCCACAGTTTCTAGCTGGAGAATCATCTTTTGTTTACAGG
chr1:210961001-210961019
TCCCCAGTCCAAGTGCAAGAACCTGGGTAT210961001CCTTAGGCAGCTACAATGTCGGCCTCACTCAAGAAGAAGGAATTTGCTG
chr1:214477442-214477460
TCTCACACAATACACACGCGAGCACCTAAC214477442AGTTGGGAAGCAACAATGTCCCTGTCCTTTATGGGAAGCAGGAAAAATA
chr1:218028442-218028460
AAGAAACACTTAGTGTTGTAGCAGGAGAAA218028442ACTTAGGATGCTACAATCTCAGTTTCAATTGTTATTCCCCATTTCATTT
chr1:225301796-225301814
TAGCCAAAACAGCTGGGAACATGTTGGGTC225301796ACATATGAAGCCAGAATGTCTCAGAGTCTCACCCAAGGCCCATGGCATG
chr1:233513103-233513121
CTCTTTGGTACTTTGATCAAATTAAAGATG233513103CCTTAGCAAGACACAATGTAAATGTATTGAATTTGTTATTGGTACTGTG
chr1:243661356-243661374
TTTTGTATTCAGTCATCCTAGCATTTCTAA243661356AGTTAGGAAGCCACTGTGTCAAGAGCGAGGCCACCAGGCCACCTGCCTT
chr1:246280942-246280960
GCTCTTGCGCACTCTCTCTCTCTCCCTTCA246280942ACTTAGAAACCCACTATGTCATGCAGGCAGCCAGAAACTTCAAGAACCT
chr2:2480994-2481012
TTTTCTTAAGTCTTGTATTTTTTGTTTCCT2480994ACTTAGGAAACCTCTATGTCCAGATTACAAAACTTTTTGTATATATTTT
chr2:17682889-17682907
CATTTACAATTAGTTTCTCCTTCCATTTAC17682889AATTAGTAACCCACAATGTATTTTATTTGCAGAGCAGAATATCAGAAGT
chr2:22809080-22809098
TGATCTCTGGCCCAAATTGTCTAGGGTATC22809080AGATAGGAAGCCACAATGGTGGATATGACTTACACCTGTGACTAAAATC
chr2:36811776-36811794
TTTCCAAAGAATAAATGGGCAACAAGGATT36811776ACGTAAGAAGCCACCATGTCATTCTATTACATAGTGTAGAACTAACATG
chr2:50943477-50943495
TAAACCAATTTCTGTTCACAGGGGAGAAAC50943477ATTTAGGAAGCCGCAATCTACAGTAACTTTGGGAGGAATCTGTCCATTA
chr2:64485305-64485323
GAATCAACTCCCATGTAGAATGCAATGTTT64485305ACTAAGGAAGGCACAATTTTAAAAAGTGCTGAGTTGAAGCATACATTTA
chr2:67369254-67369272
TTATTTAAGATCATGTATACACAGAGAGAG67369254ACTTAGGCAGCCACCATTTTCTTAAGCCAACCTCTTTTAACTTGAGTTG
chr2:86128451-86128469
TCCTTGTACTCGGTACAGCTGCATGTAGAC86128451ACTTAGAAACCCAGAATGTCAGAGCTGGAAGAAGTCTTATATATCATCC
chr2:99479679-99479697
ATAAGATTATCAGTAGATTTTTCATCAGAA99479679ACTTTGGAAGCCAGAAGGTAGTAGGCTGATATGTTCAAAGTGTGAAAAG
chr2:102985835-102985853
TCTGATACGGGTAGTAGAGAATACAGCCTG102985835GCTTAGGAAGCAACAATGGAAGCAAGAGATTGAGGCAGGATGTCAGAGA
chr2:105438896-105438914
TCCATTTTATAACCAAGAAACACTCATAGC105438896ATTTAGTAAGCTACAATGTTGCAACTTCTATTCAAGTTGAAGTTGACAG
chr2:106038868-106038886
TCCTTGGTGCTTCTCAGATAAGACAAAACT106038868ACTTAGGAAGCAAAACTGTGATGGGAATAGTGGATCACATATAAGAGAA
chr2:108026368-108026386
GCTTAGAGACTCAGAATCTTTGTAAAGGTG108026368ACTTAGGAATCCACATTTTTAAAAAGCAAACCTCCAGTGTGTTTTATCA
chr2:114796202-114796220
ACTATGCCCAGCCTGATAAGTGAAATTTAA114796202ACTTAGGAAGGCAGAATGGAGGGTTAAGGGTAAAGCTTGGTAGAACACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACTTAGGAAGCCACAATGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACTTAGGAAGCCACAATGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.340 | 7.330 | search_plus_done; http://172.18.8.78:28018/match?q=ACTTAGGAAGCCACAATGT&k=3&no_gap=1&offset=0&limit=50
7.352 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).