GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 01:23:25, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:36326499-36326517
ACGAGGTAGTCAGAAAATAGAAAAAGCAGA36326499ACTTGGTGACAAAATGGATACACAGAGTGAGGGAAGGAGGCAGACTCAT
chr1:44383752-44383770
TATTTCTTCCATTGCATTAATGTATAGATA44383752ATTAAGTGATAAAATAGACATCTAAATTTTTTTCTTTCTCTTTTTTTTT
chr1:53518102-53518120
TGATGTAATTTGTGTGCATGATAGAAAAGT53518102ACTTAGTGATAAAATAGTTTGATTTTTTTCCCCCTTCTGGTATTATAGT
chr1:63074218-63074236
CAGAATTACTGTCCATACACCTCAAATGGC63074218ACTTAGTGAGAAAATACACAGAATATGGCAAATCATAATAATAAAAATT
chr1:68874289-68874307
TGTTCTTCGATGTTTTGAGTACAGTCTATC68874289AATTAGTGATAAAATACACCTTATTGAGAACCCAAGAATCTGGCAGCAT
chr1:72097351-72097369
AATATAATGGTCTTATAAAAATTCACATTC72097351ACTTAGTGAAAAACAAGACTAACTAGAATTTAAATGTGAATGAAACCAT
chr1:76849991-76850009
GAAATCATGTTAAAAATAAAAGATGCCATG76849991ACATAGTGACAAAATGGGCAATTTGACAGGAATATTTAATGATCCGAAA
chr1:82725832-82725850
TTTCCATTACATATTTTGGGAATTTTTTGA82725832ACTCACTGTCAAAATAGACCGAAAATAATGTTGAGATTATTTTCTTATG
chr1:86974097-86974115
CAAACCAAGCACTTAGCTGATGAGAAGGCC86974097ACTTTGTGACAAATGAGACTGAGGTCCCAACTTCGTAGAACATGGTTAC
chr1:88157829-88157847
ATAATAATTTTAAGTTTGTACCACCTAGCA88157829ACATAGTGTCAAAATACACAAGTCAAAAATAGACAGAAAAAAGTAGAAA
chr1:91139109-91139127
TAAATACACTCAATATTATAACATTGATAA91139109AATTAGTGAGAAAATAGAAATATTGGAATAACTAACTGCCTTAGATTGT
chr1:91825955-91825973
AAAACAGAAAAAAGCAAGGGTTGCAATCCT91825955AGTTTCTGACAAAATAGACTTTAAACCAACAAAGATCAAAAAAGACAAA
chr1:96656715-96656733
TAGAAAAGAAATAATGGCTTTTTTTTTCAA96656715ACTTAATGACAAAATAAACCTAAAGATCCAAGAAACATACAGAATTCTA
chr1:98600391-98600409
TTTAAAATAGATTTGTGTATATTTTATGGC98600391AGTTAATGATAAAATAGACTAGTATCTAAATATATTTTTTGCATTCATG
chr1:99183466-99183484
GACCTTCTTATTTAGAAGCTTTTAATGTAA99183466ACTTAGTGAGAAAAAAGACATATATCCGTGAAATGCATTCAAAATAAAC
chr1:99408660-99408678
TTATAGAGGTGGTTTATAGAACATAGCATC99408660CCTTAGGGGCAAAATAGACGGGGAGCCACGAGACTACCTAATATATATC
chr1:107028656-107028674
CTTGCTTTACAAGTTTTTTTCCACAAATTA107028656ACTTTGTCACAAAATATACGTAATTGTTAACATAAGGGTCAGGAGAAAG
chr1:115727198-115727216
TACTGGTGCCTTCAGTTCCCTCTCATATCT115727198ACTTAATGACAAAATGTACCATTGGCTGCTGGGCATGTGTGTGACTGCA
chr1:146750862-146750880
AAGCTGTTACAGAATACCTTAACATTTCCA146750862AGTTACTCACAAAATAGACGATCTGGAGATAACCCAGTCTAAAAGGGCA
chr1:158769416-158769434
AGACATTTATCTATTTACCTTCTGTGGGAG158769416ATTTAATGAGAAAATAGACAAAGGACATCCAACTATAAATCGTATGTTT
chr1:160484010-160484028
AAACCAGAAAAAAGCAGGGATTGCAATCCT160484010AGTTTCTGACAAAATAGACTTTAAAGCAATAAAGACCAAAAAAGACAAA
chr1:160529623-160529641
GAAACAGAAAAAAGCAGAAGTTACAATCCT160529623AGTTTCTGACAAAATAGACTTTAAAGCAACAAAGATAAAAAAAGACAAA
chr1:162024626-162024644
TCAAGTTGCATTTTGCTGGCAGTGCAGGAG162024626ACTTAGAGACAAATGAGACAGAGTTGCTTAAGTCTTTTGTGGCAGCACA
chr1:166557790-166557808
ACTTTTCTCCTACTTTAATCTTTTTGCAGG166557790ACTCACTGAGAAAATAGACCAAAATATACACCCCTGTGGAAGTGTCATT
chr1:166742916-166742934
CTCATAGATGCAGAAAAAACATTTGATAAA166742916ACTTAGCATCAAAATAGACATAGAAGAACCGCATCTCAAAATATATATG
chr1:169059142-169059160
TTTTTGTTTTTTTTTTAATCTGATAGTAAA169059142ACTAAGTCACAGAATAGACAATGGGTTCTTCTGGAGTCAAACAATAAAG
chr1:169951473-169951491
GAAAAGTGGAAATGAGCCTTTGAGAGTACA169951473ACTGAATGACAACATAGACACAGAAAATAAAAGACTCATTTGAATGCCT
chr1:170084230-170084248
ACATGATATTCATGACTGGCCTGTTCTGAA170084230ACTTAGGGACAAAGTAGATGCTGACCATGGTGCTGAAGGTTTGAATTGC
chr1:174046427-174046445
TTAAAAAAAGTAAGCCAAACCACACAGTGC174046427ACTTAGTGACATAGTAGATTTACATTCTTGCACAAATTCCATATCTTGT
chr1:177183912-177183930
TTTTCATTATTTTTTAGGATTTTAAAAATT177183912ACTTATTGACAAAATATAGCTGTATATATTTATGGGGCAAAAAGTGATG
chr1:177693012-177693030
GGGACAGAAAAAAGCAAGGGTTGCAATCCT177693012AGTTTCTGACAAAATAGACTTTAAACCAATAAGATCATAAGAGACAAGG
chr1:178842930-178842948
ATTACAGCAGCATTTAACAGCGTGGACAAG178842930TCTTAGAAACAAAATAGACGAAGCAACCACAGAAGACCATATTTTTAAA
chr1:179226221-179226239
TGAGCCACCACGCCCTGCCGTCTTCAATTT179226221ACTTAGACACAAAAGAGACCAGACAGTTTGAGAGACAGGGCCCAGAATC
chr1:182761111-182761129
GCAGGGGAAGAAGATAACAGAATTGAAATG182761111ACTTAGTCCCTAAATAGACAAGAGTAGTGAGTGTTGGAAAGGAGGCACT
chr1:188187242-188187260
AGAATAAAGAGTAAACTTAATCCAAACAAT188187242ACATAGTGAAAAAATAGATGCTGTATTGACAAGAAATGGAATTAATAAG
chr1:189457042-189457060
TGTTTCAGTCTTTCCACAAGGCTGCTTCCT189457042ACATAGTGAAATAATAGACATAAGAGCTAAAGATTTCATGTTTTTAAAC
chr1:190258590-190258608
TATACATCAGATAGGGAGACTGAATATGGT190258590ACTTTGTGACAAAATAAATTTTCAGAAAAAGTATAAACTTAAGTTTACA
chr1:192116952-192116970
CGCTGGTCTTGTGACCCCACCCAGGAACTG192116952ACTCAGTGAAAAAAAAGACAGCTTTGACTCCCTAGGATTTCATCCCTGG
chr1:194686261-194686279
ATTTTTTTGTTGTTGCGATTGCTTTTGGTG194686261ACTTAATCACAAAATCGACAGTAACAAAGAGTGGAGAAAGGACCCCCTA
chr1:194914558-194914576
GAAACTGTGGGATCCATACAAAGGAATATT194914558ATTTAGTGACAAAAAAGAATATCAAGACACAAAAATACATGGATAAATT
chr1:195406521-195406539
TCATTTTAGAACTTAATACTATTAGGAAAG195406521ACTTAGTGACAATATGTACATTCCAGAAGTTTAAATTAAAATATAAGAA
chr1:196263149-196263167
TCAAACAACTCAACAGCAATAAAACACATA196263149ACTGAGTCACAAAAAAGACAATGGACCTACAGAAACACCTCTCAAAAGA
chr1:216856271-216856289
GCACTCTCGTAAAGTGGCAAAATGTGAATC216856271ACTTAGTAACAAAATGGGCACCAGCTGCTATTGTCAGAGAATGGTGATG
chr1:220817612-220817630
AAAGCAGAAAAAAGCAGGGGTTGCAATCCT220817612AGTTTCTGACAAAATAGACTTTAAACCAACAAAGGTCAGAAAAGACCAA
chr1:229355612-229355630
GTGAATGTACTTAATCCTACCGAACGGTGC229355612ACTTAGTGTGAAAATAGAAAATTTTGTGTTATAAAAATTTTGCCTTAAC
chr1:233741504-233741522
TAATATAATAGTTTGTATATATTTTAAGGT233741504AGTAAGTGATAAAATAGACTAGTATCTACATGTGTGTTATGCATTAATA
chr1:238584655-238584673
GAACTAGGTATTTCCACACAAGAAAATACT238584655ACTCAGTGATAAAATGGACTGATATACTCACCAGCATATGTAATAAATG
chr1:245162275-245162293
GGGAGAGGAAAGATCTGCCTTCTTTGGCTT245162275ACTTAGTGAGAAGGTAGACACTTTTCTGCCAATATTATACATAATAGGA
chr2:13016619-13016637
TAAGAAGCCTTACTAATTGTAATAAAGGTT13016619ACTTAATGACAAAATAGGCTGAGCGCAGTGGCTCATGACTGTAATCCCA
chr2:13116090-13116108
TGGCTCCTTGGAGAAATGGCTGATTCCAGG13116090ACTTAGTCAAAAAATATACAGGATAAGCCTGGAGCATCTTGTAGCATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACTTAGTGACAAAATAGAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACTTAGTGACAAAATAGAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.570 | 7.559 | search_plus_done; http://172.18.8.78:28018/match?q=ACTTAGTGACAAAATAGAC&k=3&no_gap=1&offset=0&limit=50
7.582 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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