GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-28 09:31:49, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:1205259-1205277
GTTCCCACAAACCGGAAGTCTACTCTACCC1205259AGTTTCCTTGCTGATATGCTTTGGCTATGTCCCCACCCAAATCTTATAT
chr1:5156675-5156693
TGCCGCTCCCTATACCACGCCTGGTGCATC5156675ACTCTGCTTGTTCATCTGCATCCTATGTCTTATCCTTTATGATAAATGG
chr1:6580256-6580274
CTGCCCAGCTGAACTCTGCTGATTCGCAAG6580256ACTTTGCTTGCTCAGCTCCTGGCACTGCAGACTGGACCTGCTGCCCCCA
chr1:14274015-14274033
GTGGGGACGCAGAGCCAAACCATATCAGTG14274015ACATTGCTTCCTCATCTGCAGTGTGTCTGTGTCAAGTCTCCCTCTGCCT
chr1:16925417-16925435
ATATTTAAACTTAGCAGCCACCATAGATTC16925417ATTTTGCTTGATCATGTGCTTCATAAAAATGGAATCATTTTGGCTGGGC
chr1:28700623-28700641
TCTTAAATTATATTGAACATTGGTCCCATT28700623ACTTTGTCTTCTCATATGCTGTGATTACCTTGTGCCTAGGCAGAATGGC
chr1:30252475-30252493
GTGTCCAGAAAGTGATATTCCTTCCCCAAG30252475ACTTTGTTTGCTCATTTGTAAATCCAGGGGTTGATAATAACCACTGTGA
chr1:30923500-30923518
AATGTGACCCATGCATTTCAGTGCAAATAA30923500ACTTTGCTTTCTCACATCCCCTCGTCCAAAGCCCTCATCCTCCATCATC
chr1:37024238-37024256
TGGGTCTGAGGCCCTCCTTTTTTACCCATG37024238ACTTTTCTTGCTTAAATGCAGGAAGCAGACGGACATTGGGGTTGCGTGG
chr1:41096719-41096737
TCCACTGCATGACTCACAGCAGGACACTGC41096719ACTTGGCTTCCTCATTTGCTGGGAGGGTCAAAGGTTGAGCACTGTCCTG
chr1:44777925-44777943
GTGCAGATGTGCCCTGCTATTCCTGCAGAT44777925ACTCTGCTTTCTCCTATGCTTGATAAGGTCTGAGCTTTGGCTTTATTGG
chr1:52030671-52030689
TTATTTTTCCATGGTGCTGAAGGCCCAGAC52030671ACTTTGCCTGATCATCTGCCTTAATTCCCTTACTACACCTCCCTCCACC
chr1:53387654-53387672
GGTGGTGTGAAGATTAAATGGGGTGTGTGA53387654ACCTTGCTTGCACATATGCTCAATTTCATTTTTTAAATGAAATGACATT
chr1:58291598-58291616
TCCTGGGTCTCATTCCGCCCTCCCAGAATA58291598ATTTTGCATGCTCATCTGCATCAGCATGTTGAATTATACAAGGTAGCAA
chr1:64359138-64359156
TTGGCCTTGAAGATGGTTATTTACTTGTTT64359138GCTGTGCTTGCTAATATGCCATATGAATAGAAAAGAGGCTGATTTTTGA
chr1:74459073-74459091
CTCAGAGTGATCCTTCCCTTTATTTGGGGA74459073ACTTTTCTTGCTCATATTCAAGCTTTGGGTCTACCATTCTACAGACCCA
chr1:78431251-78431269
TAAATGATTTATTTACATTTTTAAACTACC78431251ATTTTGCTTACTCATATGCTACAATTATTCATTCAACAAATATTTAAAT
chr1:82726954-82726972
TGATGGGGAGCAGCTGTAAATACAGATGAA82726954GCTTTGCTTGCTCACCTGCTGCTCACCTCCCTCTGTGCAGCCCGGTTCC
chr1:84226312-84226330
CTCTGCAATGCTAGGGTTTTATCTGACCTC84226312ACTTTTATTGCTCAAATGCTCCAGACTCTCTTTCCCTTCCTCTTGCTCA
chr1:84617365-84617383
CACCAGAAATAGATTCCATCTCAAGAAACT84617365ACTTTCTTTGCTCATCTGCAAGAAGCAACTCCTCACTCGTTATAGTTTT
chr1:90702467-90702485
TTTTCAGTGAACCTGAAGTTAAAACCAGTT90702467ACTGTGATTGCTCATTTGCTTTTTGGTTCTTGTGACAGTGGTTTTCTGT
chr1:94668213-94668231
GATGCTCCTCTTCTGCACGAAACATGGAAG94668213ACTTTGCTTTCTCATATTCATCTTGACGTTGCATGCATAATAATTTTGC
chr1:97634358-97634376
TGAATTTAACGTGATTAGGCACTACACCTG97634358ACTATGCTTGCTCATATAGAGAAGGGGCTTCAATTCCCACTTAGTAATT
chr1:99492513-99492531
ACTGGACAATAGATTACTAATATACTGCAT99492513TCTTTTCTTGCTCATATGTTTAGCTCAGTTTTTTATAAAGTTGCTGGTA
chr1:102003148-102003166
AATAAAGCTCTTGCAACACTCATGTACAAA102003148TCTTTGCCTGGTCATATGCTTTAATTTCTCTTGGGTAAGAAATTAAAAG
chr1:102982134-102982152
AATCATCACATTAGTGGCCTTATTTTGATT102982134CCTTTACTTGCTCATATGTGAACGTGACAATCTTTGCTTTTGCCAGACC
chr1:103203656-103203674
GCATATAAGACCCCTTTTCCTCCAAGTATA103203656ACTTTGTTTGTTCAAATGCTCTCAGATGTAAAGCTGTCTTCATCAACTT
chr1:105428786-105428804
TAGGTGGTCTGTTTACTCTGTTGATATTTT105428786CCTTTGCTTTTTCATATGCACTATAATTTAAGATATTTTAAAATGTAAA
chr1:107324606-107324624
TTTGGCTACAACCATGCTTGAAGAGTAATA107324606ACTTTGCTTTCTCTTAAGCCTTCCAAATCTTGTATTTGTACTTCTTCTT
chr1:116656625-116656643
GCAGGCCAAGGGCCCCAGCTCCTCCTCGCC116656625ACTTTTCTGGCTCATATTCATCCTTCAAACTCAGAGTCCACTTTCTCAA
chr1:145033890-145033908
TAAGGTTCATATATGATTCACCTGATGTTT145033890ACTCAGCTTTCTCATATGCTAGAAACCAGAACATTTCCACTGAAATGGG
chr1:168572702-168572720
TTTAGGTTGTTTCCTAGCTTGTGGCTACAC168572702ACTTCACTGGCTCATATGCCCACCTGCATATATATTTTAGCCACACACC
chr1:169610740-169610758
GGTATCTTATACAAGTTTCATGAACTCGTG169610740ACTCTGCTTGCTGAAATGCCATTTGAATTGGCCTGTGGTATTATGCTCA
chr1:172702585-172702603
TTTATCCCAATGGTTTTGACTGTTCTCGTA172702585TCTTTGCTTCCTCATATGCATTTTAGAATCAGCTTGTTGATATCTACAT
chr1:177531424-177531442
TATTTCCCTTTAAAAAATTGTAGTACATGT177531424AATTTACTTGTTCATATGCCCCACAGACAAGAAGCTACTATATGGGGAA
chr1:184901681-184901699
TAATGGGGAGCGGCTGTAAATACAGATGAA184901681GCTTCGCTTGCTCATCTGCTGCTCACCTCCTGCTATGAGGCCTGGTTCC
chr1:193432594-193432612
TCACTTTCTAGGCATGTGTGGATGAAAAAG193432594ACTTTGCTTGCTTAGTTGCACGTCATTCTTAGTTCCTTCTCTTTTGAGT
chr1:193673786-193673804
GAACATATCCCTCAGGTATAAAGGGGAGCT193673786ACTGTACTTGTTCATATGCTCATTCCTTTTCTTCCTAACTAGAATACAG
chr1:199263807-199263825
CATCAATCTGTCCAATAACTTTAGTACAAT199263807AACTTGCTTGCTCACATGCCTGCTATCAGTGTCATCTGGAGACTCACAG
chr1:206689096-206689114
TCTCTTATTTGGGAACAGGTACCATTGCTT206689096ACTTTTCTTGCTGATTTGCAGGAGGCTGTTTTTTCTATCCAAGTTGAAT
chr1:211894716-211894734
GGATACTCCTCTTTTATCCTTTTGGATGGT211894716TCTTTCCTTGCACATATGCTGGTGAGTTCTCTGCTCAATACTTGCAGAG
chr1:216767514-216767532
TCTCAGATGTGTGCCCTTTATCTCTTTGGG216767514CCTTAGCTTGCTCATATGTAAAATGGGGGTAAAAATACTATGTATCTCT
chr1:233310603-233310621
TGAATTTTGGTGATAAACTTTGTGTGCATA233310603ACTTATCTTGCTCATATGCAAATGTATAGGCCCATTGGTATATCTCTGT
chr1:235120341-235120359
CATTTGACCTCTGGTGGCTGCCAGCAACAT235120341ACTTTGCTGACTCATTTGCATATATGGTGTTCGAAACACACTGGCACAT
chr1:243545004-243545022
TATTTACTGAGCACCTACTATGTTTTAAGT243545004ACTTTGCTTGGTCCTAGGCATAGAGAGAAAAAATAAAACTCAGTTTCTA
chr2:4335360-4335378
TCCTTATTATTACATTCTAACCAGAAATTA4335360AATATGATTGCTCATATGCCACATCAATTCATTTCCTGGGCATCTGATC
chr2:12978141-12978159
CAATTTGGATGTTTGATCTATTCCCATTGA12978141ACTTTGCTTGCTCAAATTTTATTTATTTATTTATTTTTAAATTTGTATT
chr2:16716384-16716402
ACTGTAGCATCCTAAGAGGCAGACATGCTT16716384CCTTTTCTTGCTCAAATGCCTTGTGGTCTGTGCTGCACCATTCACAGGT
chr2:21205271-21205289
TAGGAAAAAGGAAAGAGATCAATTAGACTG21205271ACTTACCTTGATCATATGCTATCCCTCTCCTCCCACTACCAATCCCAGT
chr2:32631498-32631516
AAAAAACCCACAAAACCAACTGTTCTTTTT32631498TCTTTGCTTTCTCATATGATGTATACTTTTTTTGAAATTCAAATTGTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/ACTTTGCTTGCTCATATGC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : ACTTTGCTTGCTCATATGC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.483 | 7.474 | search_plus_done; http://172.18.8.78:28018/match?q=ACTTTGCTTGCTCATATGC&k=3&no_gap=1&offset=0&limit=50
7.495 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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