GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-30 08:56:35, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6760608-6760626
CTGGGTTGAGTTCAGGCTCTTGCACTTTCT6760608AGTAGTGTGACTTTAGACACACTACTTAATCTCTCTATGCCTTGGTTTC
chr1:16901735-16901753
ATCGTCATCGTTGTCATTTTCTGTAAATAC16901735AGAAGTGTTCGTTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:24973965-24973983
ATACTTAAACTTCAGACAAATTGGCAGCAT24973965ATAATTGTTCCTTTATACATGAGATAATATGATGATATAACTGATGTTT
chr1:57254094-57254112
ATCAGATTGTGGTGGGAGTGGTGAGGGATG57254094AGAGGTGTTCCTTTAAATAGAAGAAGACACAAAATAGCACAGAAAAATG
chr1:72531346-72531364
GACTGACTTCAAACAAAATAAAATTAAGTA72531346TGAAGTGTACCTTTAGAAAAAAGTTAAATTGAAGGTTGGTCATCATCAT
chr1:76394323-76394341
GAGGACATAATAGATGTGTTCAAATACTTG76394323AGAAGTTTTCTTTTAGAAAAGAGAGTTAGCAGACTGATCTTTATAGCTA
chr1:93959450-93959468
ACACTATTAGAAATATTCTTGCTAAAAGGA93959450AAAAGTGTTCCTTCTGACACCAAACACATGAGTTTTTTCCACTTGAACA
chr1:96290280-96290298
AAAAATTTCCCCATTACTTCTAGTCACAAA96290280AAAAGTGTCCCTTTAGTCATTGGTGTATCCATGGTGCAATTATAAAATT
chr1:102948515-102948533
AAATCCCATCTATAGCTATATAGTATAGGA102948515AGAAGTATTCCTTTCTACACATCAAAAAATAATCATTGATTGGCTTAAA
chr1:111604491-111604509
GGTTTCCTCGCATGCTGGTTGTGCTAGCAG111604491AGAAGTGGTCATGTAGACAGACTCAGGACTTCTGGTTAGCCAGGATGTT
chr1:120382963-120382981
ATCCTCATCTGTGTCATTTTCTGCAAATAC120382963AGAAGTGTTCGTTCAGATATTTCCCACTTCACACTCTGCAAGCACAGTC
chr1:146047043-146047061
ATCGTCATCGTTATCATTTTCTGTAAATAC146047043AGAAGTGTTCATTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:146240570-146240588
ATCGTCATCGTTATCATTTTCTGTAAATAC146240570AGAAGTGTTCATTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:146590621-146590639
TCACCTTCATCATTCTCTGCAAACAAATAT146590621AGAAGTGTCCATTTAGATATTCCTCACTTCACACACTGCAAGTACAGCA
chr1:147588829-147588847
ATCGTCATCGTTATCATTTTCTGTAAATAC147588829AGAAGTGTTCATTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:148023680-148023698
ATCGTCATCGTTGTCATTTTCTGTAAATAC148023680AGAAGTGTTCGTTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:148336288-148336306
ATCGTCATCGTTGTCATTTTCTGTAAATAC148336288AGAAGTGTTCGTTCAGATATTTCCCACTTCACAGTCTGCAAGCACAGTC
chr1:158991517-158991535
TCTACTAGTTTACATTCCCACCAGCGGTGT158991517AGAAGTGTTCCTTTTCACCACATCGATGCCAGCGTCTGTTTTTTAAAAT
chr1:159522249-159522267
TAGTCTCCTCAGAGTGACTGATCACCCAAC159522249AGGAGTGTTCATTTAGAAACTGTGAAAACGCTCATCCTCATTTTTTTCC
chr1:161470738-161470756
ATTAAATCCAAATACATATTTCTTCTCTCA161470738AGAACTGTTCCTTTACAAAACCTGTCTATAAAGCCTGCAAAAACAACTA
chr1:167756915-167756933
TCAAAGTCAGTCCTGGATGTATCATCCATA167756915AGAAGTCTTCCTGAAGACATTCAAGAGGGAAGTCTTTGCTTTGGAACCC
chr1:173936012-173936030
TATTGTTGAAAGTCTAGTGTATCATTATAT173936012GGAATTGTTCCTTTATACATTAGCTTTATATTCATATAAGATTATTATT
chr1:186830206-186830224
GATTTTGTGTTGAACATTATGGTGAAAAAT186830206AGAAGTAATCCTTTAGAGATAACTTATTTGCTTCCGTCAGGCCCCTGGG
chr1:194287291-194287309
ATTAGAAACTAAAGGAGTGTGACTATCAAA194287291AGAAGTGTTCCCATAGAAAGAATGGCTCTCTGAATTGTACACATGTGTA
chr1:199028256-199028274
AATTCAATATAGAAGAAAAGGATTATATTA199028256AGTAGTGTTCATTTATACAAGTGTTTTCCTACAGTTGAAGTTGAGAAAG
chr1:201288259-201288277
AAAAAATGCATTTCTTGTGCTATCATCTTG201288259AAGAGTGTTCTTTTAGACAAAAGTCTACCGATGGGTTGCTAATGAGTCA
chr1:209749206-209749224
CTCCTTGGAGATGAGAGTGCTCGGGAGCTC209749206AGTAGGGTTCCTCTAGACAGTTATTCCAAGAGGTGAGGGTGCCTGTAAC
chr1:212715173-212715191
TTCAACTTTCGCTGCCCTTAGTTTGCAAAC212715173ATAAGTGGTGCTTTAGACATTCCTTTTAAAAAATATTTAATGCCATAGG
chr1:227598114-227598132
ACATACAATGGTTTTATTTTTAAAAGAGAG227598114AGAAGTGTTACTTTCAACAATTGGAAAAAAGCACTGAAAGCCCATGGGT
chr1:234578153-234578171
ACTTCATAAAATGCTGTATCTATCACTCTG234578153AGAAGTGTTCATTAAGAGATTACATACATTAAAAATTAATTTTAAATTT
chr1:235267982-235268000
GTTGAGAGAAGAGAGAAATCTATTTTTGTA235267982AGAAATGTTACTTTACACATACTTTGCTGATTTTTTATCTCAAAAAACC
chr1:238779944-238779962
ACTTCTACCACAGAGCCTACCTACTGCCAG238779944TGATGCGTTCCTTTAGACATCCTATGGCTCCATTCACTACTGCATTCAG
chr1:241416313-241416331
AAGCCAATGTAATACATAGCACCCTAGGTC241416313AGAAGTGTGCCTTGAGACAGAGTTCTACAGTGATTACATATTTTCTTCC
chr2:9487832-9487850
CTTAGCCAAGTCTGTTTTCTGGCCCTAGGA9487832AGAAGTGATCCTTGAGACAAAATAACTCTAATTAGATATCCTCTTTGCC
chr2:21006269-21006287
GGCAGAAAAACAAAATTTTTAATTGGTAAC21006269AGAAGTTTTACTTTAGTCATTTTTTAAAATTGGCCTAGAAGCCAACATA
chr2:22379287-22379305
ATATTAACAATGAAGTCCTAAAGATGTGTA22379287AGAAATATTCCTTTAGAAAGAAAGATCTGGGGGAGGAGCCAAGATGGCC
chr2:28582083-28582101
GTCTGAGTCTATGCTAACAAAGTAGGAGCC28582083AGAAACGTTCCTTTAGACACAGGTCACTGTGAGCCTTGGCTAAGCCTGG
chr2:32188667-32188685
GACGGGGGTGTGACCAAATAGTCAAGGTTG32188667GGAAGTATTCCTTTAGATAAGTATTATAGATAATAAATGAAGGTAGAAG
chr2:32677569-32677587
TTAAAGATATGTAGAGGGATCTTAGAATTG32677569AGAACTGTTCCTCTAGGCATATTGTTCTTTCAGTTCCTTAAATGTGCCA
chr2:36533705-36533723
TTTTATATGACCCCATATCTTCTTGTCTGA36533705AGAAGTGTTCCTTGAAGCAATGCTCAGAGTATGCAACAAGATATTACTG
chr2:42016566-42016584
GAGTATCATTCAGAAGCTGCAACAGCAGCA42016566AGAAGGCATCCTTTAGACATGGAGGCGGAGACTCAGGGGCTACGTTATT
chr2:42913122-42913140
GCAATGTATTTCTTATGACATGAAGTTTTA42913122AGAAGTGTCCTTTTAGAAACTGTCAGGTAGTGTATGCAACAAAAAGTCT
chr2:43699818-43699836
CCTGTCACTTAACAACAGGGATATGTTCTC43699818AGAAGTGTGTCATTAGACAATTGCATTGTAGTGTAAACATCGTAGAGTA
chr2:44283535-44283553
GGCTAGCTGTGGCCATTCTTTCAAAACAAA44283535AGAAGTGTTCCTTGAGTGAGCCTTATAGCCAACCTTGGAAGACTTGGCT
chr2:51779475-51779493
TGATTAACTATGTAATTTATATACTAAAAT51779475AGAAGTGTTTCTTTAAAAATCTATGGATGAAAATCAGAGATGACTCAAG
chr2:53552155-53552173
ACAAACAATGAGGGACACAATTACTGTCGC53552155ACAAGTGTTCCAGTAGACATTTGAATTTGGAGTTGAATAAAATCGCTGA
chr2:57146515-57146533
ATTCAGTGATTGTCACTACCATTGCAAGGA57146515AGAAGTGTTGCTTAAGACAAAGTTTCTTACCTAGCCATTTAACTTACCC
chr2:59771476-59771494
ATGAAAAAAAAGTTGCTCCATGCTAAGATT59771476AGAAGAGTTCAATTAGACATAGAAAAATCATGAAGTTGATGAAGTTTCC
chr2:61421351-61421369
CCACAGGTAAGCCAATTTATTTTCCTGTCA61421351AGATGAGTCCCTTTAGACACAAGAGGCAAGGAAATGCTACTTCCCCTTT
chr2:64536654-64536672
ATCATTTTCCAAAATATATGAATGCTTCTT64536654CAAACTGTTCCTTTAGACACCTGGATGATACTAACAGAAGGGGTAAGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/AGAAGTGTTCCTTTAGACA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : AGAAGTGTTCCTTTAGACA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.529 | 7.520 | search_plus_done; http://172.18.8.78:28018/match?q=AGAAGTGTTCCTTTAGACA&k=3&no_gap=1&offset=0&limit=50
7.541 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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