GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 04:25:14, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:759213-759231
AATAAAGCCTGAAAATCATATTATTAGAAT759213GGAGGACATAGTGACATAAAACCTCAGTGACTGTAGACTCAGGGCAACC
chr1:10365639-10365657
GGCTCTGTGGTGCTGCTTTTTTCCAATAGT10365639TGATGAAATAGTGAAATAAAAGTTAACTTTGGTTGGGCTTGGAATAAAG
chr1:14512778-14512796
TAAGTGATGGTTCCTGTTACAGTAAGCAGG14512778ATACGAAATAGTAACAAAATCATGTAAGGAAGGTTGGGGTGAGGATTCG
chr1:46311298-46311316
TGAATTACATGTCAATTTAATTTATCTCTT46311298AGAAGAAAAAGTAACATAATTAAAATCACTGGGTCTCTAATCTTTAGTT
chr1:48923865-48923883
TTAACACAAAAAAAGCAATAGTGGAAGAAT48923865AGACAAAATAGTCACAGAAAACAAAAGACAAAATGACACAAGTAAATCT
chr1:62626288-62626306
AGGACATGATATGACATCCAATTCCATTTA62626288ATACTAAATAGTGAAATAAGGTTCTACTTGTATTAAAAGCAGTGTATCA
chr1:73848354-73848372
AACTACCTACATATTTTGCTTTTGTTAGTG73848354AGTCGAAATAGTCATATAAATGATAGATTTAAATCTAATGTTAGTTTAT
chr1:88100310-88100328
TAGGGATATGTATATGTAATAAAAGAGATA88100310AGAAGAAATAAAGACATAATGTAAAATTTAGGCTCCTGGTTACCTCTAG
chr1:95911446-95911464
TGTAATATAGACATATTATCTTCATTTTAT95911446AGATGAAATGGTGACTTAAAGAAGTCAAATGATTGTCTAAGGTCACACA
chr1:96912312-96912330
AGAAAGCAGAAATTGGAAAAAGGGGACAGA96912312AGACAAAATAGGGACAGAAATAAAATTTTTCTATAGGCATTAAAAAGAT
chr1:115466338-115466356
TGGATTATTTTACTATTGATATCTATATCT115466338AGAAGAAATAGTGGCATAATTCTGATTTTCTTTTAACGTGTTAAATATT
chr1:148936581-148936599
CGGACAACTGGTTGCTTACACTGTTTTCAG148936581AGATGAAATAGGAACATAAGCAGGAAGATTTTTGTCTAAATATGAAGCA
chr1:158855479-158855497
CCAAAGTTAAATTTAAGTACAAATGATTAA158855479AATGGAAATAGTGACATAATCAGGCACACAGACATATATATGCACGTAA
chr1:176060977-176060995
TAGCAATAAATGTAAATGGAAACAATCACT176060977AATAGAAATAGTGACATAATAGATTTAAAATAAAGGTATGCTATCTGCC
chr1:185256566-185256584
ATCAGGAATTGGAATAATTCCTCTTGGAAA185256566AAAAGAAATAGGGACATAAAATATTTGTACTATCAGAGGAAGAAGGGAA
chr1:190537865-190537883
CACACCCACAGTGGGAAAATATCTGTTTTA190537865AGTCAAAATAGTGACTTAAAATATTAACCTTCGGGATTAGATATTTACT
chr1:192312450-192312468
CACTGAACTTTATGTTTTTTTTAAATTATG192312450AGATGAATTAGAGACATAACATATACATGATTCTTGCAAAAATTATCAC
chr1:192745775-192745793
TATGGGTCCATCTCCTTAATAAGGAAGAAG192745775ACACGAAATAATGCCATAACTCATGTTGAACTCCTAGAATGTAGTATGG
chr1:196887390-196887408
GAAAACATGAATAAAAATAACATACAGTTA196887390AAAGGAAAAAGTGACATAAAATATTATGCAAAAACAGGGGATACCATTG
chr1:197030624-197030642
AATGTACATGATCTTAAATTCTTCTGTAAT197030624AAAGGAAATAGTGACATATAAAGAAAAAGCTTCTTTCATTTTATTCCAT
chr1:208858007-208858025
TGGGGGAAATAAAGTCACAGAGAGAGGATG208858007AGACGAAATAGTCAAAAAAGTATCAGGAAAACCAGAATGGCATCACAAA
chr1:209202854-209202872
GGAGATATACAAAATAAATGATTAAATGAT209202854ATATGAAATAGTGAGATAAGGGTCTCATATTGAATCAGGTTTTAAAAAA
chr1:220778379-220778397
AAGAGGTTCTGTAATCAGTATGTTCGGAAA220778379AGACCAAATACTGATATAAGATCTTTCTCTAAGATACATATGTGTGTGT
chr1:230095260-230095278
AATAGTTTTTCTTTATGCTGTTTGTCACGT230095260AGAGGAAAAAGTGACTTAAAAATACTTTCATAATAGTGACAAAAACTAT
chr1:243179469-243179487
TGTTTTGTTTTGTCAATTCAGCAAGAAATT243179469AGACCAAATGGTGACTTAATGCTGCATTGATTTGGCTATCAATTTCTTT
chr1:247307625-247307643
CTTCTCCTAGACATTTTATCTAGAAAAGCC247307625AGATGAAATAGCGACAAAAATGTTTACATAAAACTCAACCACAACTAAG
chr1:247970467-247970485
GAAATTGAAAGCAAAGTAAGTATAAACGCC247970467ATATGAAATAGAGACATAATCAACATTCAAAGGAGCATAAAATTCACAG
chr2:7828678-7828696
CATATGGGAAAATATTTGTTTATAACATTA7828678AGACAAAATAGTGAAATTAAAAGTATAAATATGAGCATGCTCAAAAGTA
chr2:23368775-23368793
ATACTAAACGATCCAAAATAAGGTGAGAAA23368775AGAAGAAATGGAGACATAAAAATAGATAGAACAAATAGAAAACAAAAGG
chr2:38783347-38783365
AGGAACTAGACCTAGGAAATGGGTTGCCCA38783347AGACCAAATAGTGACAGAAGTTACTAAAATCCAGGCCTTGCCCCTCAGT
chr2:38957740-38957758
AGTTTTTAAATAAAGCAGAAAAAATGACTC38957740AAACCAAATAGTGACAGAAAGAAGATCAAAGACCTTCTCCGGGCTGGGC
chr2:39730222-39730240
TGTGACTTTAGACCCCCTTCCCCCCGCAAA39730222AGACTAATTACTGACATAATGGATTTTGTTTTTTATTTCGTCATTCTGT
chr2:41928602-41928620
ATAAGAGGGTAACACAAGCGAGTCTTGTGG41928602TGACGAAAGAGTTACATAACCTGATTATGATAGTGGTTATATGATACTA
chr2:58989070-58989088
TTTGCATGTAGAAAAAAATAATGATGGGGG58989070AAATGAAATAGTGTCATAAAAATGTATAAAATAATCTGGCAGGGCTCAA
chr2:64125268-64125286
ATGGAAGTTTTGTGGAATTACTAGTATTCA64125268AGTGGCAATAGTGACATAAAATAACATTTGCCCAGCATTGACAAGAGTA
chr2:72379664-72379682
ATTCTCTTCCACAGCTATTATATTTCAGTG72379664AGATAAAATAGTGAGATAATACTATTTTTAGATATTAGATTTACTTGTT
chr2:72804771-72804789
GTATGTTATGGTACTGGCAGGAGGTGGTGA72804771AGACTAAATACTGATATAAATATATAAATACATATAATATATATTAAAA
chr2:87586909-87586927
GAAATAATGAAATTGAAATGAGATGAGATG87586909AGATGAAATAATGAGATAAAATGAGATGAAATGAGATGAACGATGAGAT
chr2:90094777-90094795
TAAAGACAGTTCTGCAACAGAAGGAATGCA90094777AGACTAAATAGAAACATAAAGATACATAAGAGATGGACACTGGAAAGGA
chr2:90294884-90294902
GAAATAATGAAATTGAAATGAGATGAGATG90294884AGATGAAATAATGAGATAAAATGAGATGAAATGAGATGAACGATGAGAT
chr2:106588052-106588070
TTTTATAGATGGGAAAACCAAGACTCAAAA106588052ACAAGAAGTAGTGACATAAAAGGTGAGGTTCACTCATATCCAGGGTGAT
chr2:108743154-108743172
ATTATTATTATTATTTCCATTTTACTGAAC108743154AGAGGAAATAGAGACACAAAGAGACTATTAGTTGACCAAGGTCAACACA
chr2:109438783-109438801
AAAATATTATAAAGCAAACATTGACAGAAT109438783TGAAGAAATAGTAACATAATACTACTAGGAAACTTCAATACCCCACTTT
chr2:110727962-110727980
GTGAAAGTACTAAAAGTCTTTGAAATGCAT110727962AGAAGAAATAATGGCATAAGCTGTCCTCTCTCTCTGCCTTACTGCCAAA
chr2:111025922-111025940
GTGAAAGTACTAAAAGTCTTTGAAATGCAT111025922AGAAGAAATAATGGCATAAGCTGTCCTCTCTCTCCGCCTTACTGCCAAA
chr2:118739501-118739519
AAACTAAGATGGTTATCTATTTGGAATATA118739501AAACAAAATAGGGACATAAAAAGCCCTAAATACCAAGGACTGTGAACTT
chr2:122032652-122032670
AGTTATGACAATATTCTGCCCTAAATAACA122032652AAAGGAAATAGTGAAATAACATGTAGAGGCTGGGCGCGGTGGCTCACAC
chr2:128018319-128018337
CATCTATCCCCAAAATATAAAGCCCTCTGG128018319ACACCAAATACTGACATAAACGTAATATTTGTGTAACAGGAAAGAAAGC
chr2:134251418-134251436
GCTGGTTAAATGATGTGACAAAGATCAGGC134251418AGAAAAAATAGTGACAAAAGGAGCACCTGGAAGGCCCAAGGCCAGCTGC
chr2:136886552-136886570
TAGCCTCAAGACACCTAAGTCCAGTATGGG136886552AGATAAAATAGGGACATAAAAAACTGTGATAAAAGCCAGAGCAGGATGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/AGACGAAATAGTGACATAA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : AGACGAAATAGTGACATAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.169 | 6.159 | search_plus_done; http://172.18.8.78:28018/match?q=AGACGAAATAGTGACATAA&k=3&no_gap=1&offset=0&limit=50
6.181 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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