GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 17:30:54, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:627586-627604
CAAATCCTCTACAATATAAGTAGAGTGAAA627586AGAGATAGCTACAGTGATGAGGGAAGGCACTATAGTGATGTGGCATTTG
chr1:4242984-4243002
GTTAAGAGTGGTGGTTTGGGGATAGCACCA4242984AGAGATATCAGCTGTGATGGCTTGAAGAAACAGTGTAAACTGGCAGTGT
chr1:6394928-6394946
TGCCATACTCCCATGTCCCAGTCATTTCAG6394928AGAAGTATCTGCAAGGATGCCTTTAAAAAGTGGCTTTGTCAGGCACGGT
chr1:7766137-7766155
AAAGCATTTCTCTACAAATCAGGTATCAGA7766137ATAGATTTCTGAAATGATGATATTCTTGCAGACTGTCTTCTTAATCAGT
chr1:12331831-12331849
AGTTTCTCTTTTTTGCTTACTGTTACCAGA12331831AGAGACAACTGGAATGATGCCCCAGCTTCTATTCTAGGGTGTGATGATT
chr1:22092532-22092550
CTAATAAGATGCAACAGGCAAGAAAGGAAA22092532GGAGAAATCTGGAATGATGCCCAAAATTGTAACAAAAAGATTTTCCAGG
chr1:25172986-25173004
TAACACCTTTAAATAAAAATTGACTCAAAG25172986AGAAATGTCTGCAATTATGAGGTCAAATTCATCCTCATAATTGGAGATT
chr1:28904127-28904145
TCACTGGCAGCCCCTGGACACAGTGTCTTC28904127AGAGATCCCTGCCATGATGTAGCCAGGCCAAAGGACAAGCCAGGTTGCA
chr1:33918092-33918110
TACCCAAAAGAAAGGAAATCAGTGTATTGA33918092AGAGATATCTGCATTCCTGTGTTTGTCGCAACACTGTTCACAGTAGCCA
chr1:35425106-35425124
AAGCAAAAACTGAGAGAAGAGAAAAACAAT35425106AGACATATCTGCAATTATAGTTAGAAATTTCAATACTCCTCTCTCAGTA
chr1:40586392-40586410
ACTCTTCTGTCTAAAGGAGGACTAACCAGT40586392AGAATTTTCTGCAATGATGGAAGTATTGTTATATTTGAGCTGTCCAATA
chr1:48517268-48517286
CTCAGGGTCCAGCACAGAGGCAGGCACCCA48517268AGAGACATCTGTAATGATGTTGGTGAGTGAAATAAGACCCTGCTGAAAC
chr1:50329635-50329653
AACCCCCCAAAAAAGAAATCAGTATATCAA50329635AGAGATATCTGCACTCCTGTTTGATGCAGCACTTTGGGAAAAACCGAAG
chr1:55375270-55375288
GTTAAGAGTGGCAGTTTGGGGATAGCACCA55375270AGAGATATCAGCTGTGATGGCATGGAGAAACAGTGTAAACTGGCAGTGT
chr1:56155188-56155206
GCTCTCTCTTCTATACCAGCACTATCGAAC56155188AGAGCATTCTGCAATGATGGAAATGTTCTATATCTGCATTGTGCAATAT
chr1:56761341-56761359
TTGATGGGGGAGATGTATAGTATAATCCAA56761341AAAGATAGATGCAATGATGGAATTACAAAGAGTTGAAAGTGCAGAATAA
chr1:57884047-57884065
GAAAGACAGAGACAGAGAAAGAGCAAAGAA57884047AGAGATACCTGAATTGATGGATACCAAGTAAACAAATCATGAGTCCATT
chr1:68050234-68050252
AGAGTGTCTTCTAGACCAGCGCGGTCCAAC68050234AGAACCATCTGCAATGATGGAAGTATTCTATATCTGCACAGAGGATCTG
chr1:71807634-71807652
CTAATAAGGTAAAAACAAGTTTAAATCTCA71807634GGAGATATCTGCAAGGAAGCCTGTGTCTTTGCTGCTGCACAAATGCAAC
chr1:78578911-78578929
TATGTGTGGGTTCTATTTCATTAAAAAAAA78578911ACAGATATGTGAAATGATGGCTGTTTAAAAATATTTTTTCTTTTCAATC
chr1:83711451-83711469
TTTTTAGTTCCTGCTCAGTGCAAAGAACAC83711451ACAGAATTCTGCAATGATGTTGTTCTATTATTGCTTGAAATATCTACTT
chr1:89682861-89682879
ATCAGTGGCTTCCAAAACTTACTGTCCATG89682861AGAATTATCTGCAGTGATGGTTACAAATGCTCCAAACCTGTAGTTTCAA
chr1:90666842-90666860
TTCCTTCAGCCCAAGGGCAAGCTCGGGGTA90666842AGAGATGTCTGGAATGATAGTGTCATTTATTTTGTGTATACTTATTTTA
chr1:91400180-91400198
TAATAAAATTTTCACAGATGAGCAGTATTA91400180AGAGGTATCTGCAAGGTTGGGCTAACCAACCAAAAATAACACAGAAATG
chr1:92890649-92890667
CCTTCAGAAATTTATATTAAAGAAATAATC92890649AGAAATATGTGCAAAGATGTATCACAAAGGTTGTACTGTTACTAATTAT
chr1:94957548-94957566
CACCATTCCTCTAGAACAACACTTTCCCGT94957548AGAACTTTCTGCAATGATGGAAATGCTCTATACTTTCACTGTCCAGTAA
chr1:97174085-97174103
CACTTCTGAGCAATACTTAAATGAAATAAG97174085AGAGAAAACTGCAAAGATGTGGGAGATGGGCATTCAAGGCAAAAAGTAG
chr1:99267500-99267518
TTTAAGAGTAGCAGTTTGGGGTTAGCACCA99267500AGAGATATCAGCTCTGATGGCTTGGAGAAACAGTGTAAACCAGCAGTGT
chr1:99484702-99484720
ACTACATTACTTTTAAAATATTGGATTACT99484702AAAGATATATGCAATGATAAAAGCCCATGTGAGTGAGAATGTGCTGAGA
chr1:102799905-102799923
AATAATAAGCCTGGCAACTCTGTTAGTCAC102799905AGACATGTCTGCAATGAAGGGTGCAACGAGCTTCAGGTTTAAAATAGAC
chr1:104149217-104149235
TATACGATAGAAATAAAATCACTATCTTGA104149217AGAGATATCTGCATTCCTGTGTTCATTGCAGCTTTATTCACAAAAACCA
chr1:104181502-104181520
CAGACAAAAGAAATCTAATCACTATCTTGA104181502AGAGATATCTGCATTCCTGTGTTCATTGCAGCATTATTCCCAAAACCCA
chr1:104275644-104275662
CAGACAAAAGAAATCTAATCACTATCTTGA104275644AGAGATATCTGCATTCCTGTGTTCATTGCAGCATTATTCCCAAAACCCA
chr1:108129988-108130006
AATCAAATATCAGTCATATATCAGGAAAAA108129988AGAGATATCAGCATTGATCCTCATAACTAGGAGCCTGGTTAAATTTTTA
chr1:120538098-120538116
AGCCAATTAGATTACTAGAATATCAGACCC120538098AGAGATATTTGCAATATTGAAATATTTTCAAAATAAAGTTGTTTACATT
chr1:142705187-142705205
AATTTTAAAAAATGGGCAAAGATTTTGAAT142705187AGATATATCTGCAAAGAAGATATAAAGATGGATAAGCACATTAATAGAT
chr1:143201659-143201677
AATTTTTAAAAATGGGCAAAGATTTTGAAT143201659AGATATATCTGCAAAGAAGATATAAAGATGGATAAGCACATTAATAGAT
chr1:146111599-146111617
TAACCAAAAGAAAGGAAATCAGTACATTGA146111599AGAGATATCTGCATTCCTGTTTGTTATAGCACTGTTTACAATAGCTAGA
chr1:147653432-147653450
TAACCAAAAGAAAGGAAATCAGTACATTGA147653432AGAGATATCTGCATTCCTGTTTGTTATAGCACTGTTTACAATAGCTAGA
chr1:148909614-148909632
AATTAGTTGCTTACCTTGTAGTTTATTGTC148909614AGAGTTATGTGCTATGATGCATGTGGAATGTGTAAGGGTGTTACACAAT
chr1:166468058-166468076
GTGAGAAAGGAAATTAAATCAGTATGTCAA166468058AGAGATATCTGCACTCCTGTTTATTGCAGTGTTATTCACAATAGTGAAG
chr1:172464762-172464780
GGATATAATTTGGGACTAACTGATGAGAGA172464762AGAAAAGTCTGCAATGATGAGGACTGAGCAGTGGGTACAGAGAAGTATG
chr1:180027404-180027422
CTGAATGTGTTAGATATCAACACTGTCTGT180027404AGAGATTTCTGAAATGATAGTAATTTTCTTTATCTGTGTTGTCCAATAC
chr1:187481489-187481507
TATTACAGACAGGGCATTCTTGTGGGGGTT187481489AGAGATACCTGCACTGATGATTCTTGCACGAATGGAGCTTACATTCAAG
chr1:187735533-187735551
GTTTAGAGTGGCAGTTTGGGGATAGCACGA187735533AGAGATATCAGCTGTGATGGCTTGGAGAAACTGTGTAAACTGGCAGTGT
chr1:191144135-191144153
GTTAATGGCTTTCACGACTTTTTCTATCAC191144135AGCAATATCTTCAATGATGTAATTCTTTCATATTTTTATAATGTTTTCT
chr1:195400376-195400394
TATCCAAAGATGATGAAGTCAGTACGGCAA195400376AGAGATATCTGCACTCATATCTTTATTGCCACACTATTCACAATAGTCA
chr1:201054253-201054271
CTGGGCACCCGAGACAAGGGCCCATTGACC201054253AGAGACATCTGCAACAATGGGTCCTAGGTAGGCCTGGATTGCTTCGTGC
chr1:208651064-208651082
TCTCCTCTGAGATCATTGTTATTATGAAAA208651064AGATATATCTGCCAAGATGTTCATAATGACCAATGATACCTTAACTTGA
chr1:208796844-208796862
TACCCCTAAGAAAGGAAATCAGCATATGAA208796844AGAGATATCTGCATTTCTGTGTTTGTTGCAGCACTATTTACAATAGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/AGAGATATCTGCAATGATG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : AGAGATATCTGCAATGATG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.766 | 6.756 | search_plus_done; http://172.18.8.78:28018/match?q=AGAGATATCTGCAATGATG&k=3&no_gap=1&offset=0&limit=50
6.778 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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