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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 10:17:05, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:12423026-12423044
GCAAGTAACTGCTCTGTGCCTTTGGTACCC12423026AGATAGCTCCTGTTAGAGGGTAAGGCTCAGAGTAGGTACTCAGTAACAC
chr1:36767791-36767809
GATCATTCCTGTGCACTCTGGGCCTCCCTC36767791AGATTAATACTTTTATAGGCTGAAGTACCTGGCCTTGAGTGAGCTCTCT
chr1:47011810-47011828
ATCCCTGCCACTTGTGCAGAGGACAGCAGA47011810AGATAGAGCCTTGGATAGGGAGAGATAGGAGACCTGGCTGCAGGCCTGG
chr1:48828131-48828149
TTTTATCCCCAAACTAGTCAGCATTGCTTT48828131ATATAAAGCCTTTTATAGGTGACTACCACTGAATTTCTATCACAATATT
chr1:54294692-54294710
AGTAGGTAAATACTGACAACATAAATGCTA54294692AGATAAATGCTTATATAGGGATTTTTAATACCCTTCAGACAATCCAAAA
chr1:59887028-59887046
TATGATATTGATAATTAGCTATTTTTTGAA59887028AGATACCTCCTTTTATAGATACATGCTGAAATATTTACAGAAAAATTTT
chr1:65170969-65170987
TAAGCAAAAGAACACAAAAGAGCACATTTG65170969GGATAGATCCTTTGATATGAAGTTCTAGAACAGGTAAAATTAATCTATA
chr1:65617796-65617814
TACAAACTCTGAACAAATTCTGATATTTAA65617796TGATAGATTCTTTTATTGGGTCATATCTAAAGGATATGCAAATCCTGTT
chr1:74404066-74404084
TGGGGGACTAATTGATTTCTCTTATCACTG74404066ATATTGATCCTTATATAGGGTGACCATAGAATTTATTATCCAAGCCACA
chr1:82258257-82258275
AAACAGATTAATGGAACCTTGTTATTCAAA82258257AGATAAATCATTTTATATGAAGTGGCAAAGACTTCAAGGGCTAATAAAG
chr1:83762784-83762802
GGTATGTGGGAGATATTAATAGGGTTGCCA83762784AGATAGATCCCTCTAAAGGAATGATATTTGAGCTCAGAGCTAGTCATAC
chr1:91371298-91371316
GTTACTCCAAAATTTTGGAAAATCTAGGAT91371298AGATAGATACTCTTCTAGGAACGTATAACCAAAATTGGCTCAAAAAGAA
chr1:94614396-94614414
TGACAACTGTACTTTACTGAAGATAGATTC94614396AAATAGATCATTTTATGGGAGCAGAAAATCAATAGAACTTAAAAAATTT
chr1:96563393-96563411
CCAGGTAGATGGGTACATAGAGAGATGGAT96563393AGATAGATTTTTTTATTGGCAGAAGTGTGGGGCATGATGGACTAGAGTC
chr1:103046715-103046733
TTAAAGAGTTTTACTTCATGCCAATTTCAA103046715ATTTAAATCCTTTTATAGGAAGAGATTCAAAAAGTAATTATCTATTTCA
chr1:104544047-104544065
AAATTGATTGGATTAGCAATGATGATGTGT104544047AAATAGAACCATTTATAGGCTAGATGCAAGAAGTCCTGTAGCCTATAAG
chr1:105147397-105147415
TCTTCATTCTTTCTTTCTATATATATCCAT105147397ATATATATCCTTTTATATGTATACGTGCATATAAAATGTATATTATGTG
chr1:113796833-113796851
ATCTGGACTTAACCAACACACGACCCGATT113796833AGACAGATCTTTTTACAGGGTAGATAGCATTAGAGAAGTGCCAGGTGTT
chr1:118561009-118561027
AAGAAAGTACTTAAGAGGTTGTATAACCAC118561009AAGTAGATCCTTATATAGGTTTGAAGTGAAAATTCATACCACTTGAGTG
chr1:118900252-118900270
TGACAATTATACAAAGATGAGAGAGGAACT118900252AGATATATACTGTTATAGGTTCTTACATTATATGTGAAATGATAGAATA
chr1:119211950-119211968
TCATCGTGTTAATAGAATAAAAAATAAAAA119211950AGATAGATCATTTCAAAGGATGCAGAAAAAGCACTTAAAGTAACAGGAT
chr1:159076788-159076806
TGCAGGACTAGCTTTCCTCCTGGACAAAAC159076788ATATAGATGCTTCTATAGGATTATTTCCAGAGATCATGAAGACCTACCA
chr1:166661655-166661673
GGTCCACTTCAGAGAGACCCCCCTCAAAAC166661655AAATGAATCCTTTTATAGGGAATAAAAAAGCCTTGACAGTCTCTCTTTT
chr1:167412260-167412278
ACCCATATTTTTCTACCCCCTGGCCTGCTG167412260AGCTAGATCTTTTTCTAGGCTTGCGTTCTACCCCTCCACTCAACACCTG
chr1:172245956-172245974
GTATGAGAATTATAAGTTAGACAAAAGGCA172245956AGATAGTTCCTTTGAGAGGAAAGCATGCCTTACAACTCTATGAGTTGTT
chr1:172949406-172949424
ACAGAATAGGCAAGCATTCTAATGTGCTTA172949406ATATATATCCTTTTATATGTTTTTACAAAATATGTGAAACTTTTTATTG
chr1:175609277-175609295
AAGGTGACATGAGTAAATAGGTAATTCCAG175609277AGATAGATCTTTTTTAAGGGAGAGCCTGAAGATTTTATCCCTGTATGCC
chr1:176260005-176260023
TTTTTCTCATCAGCACATCAACATTCTCCA176260005AGATAGATCATATGATAGGCCACAAAACAAGTCTCAATCAATTTAAGAA
chr1:193855869-193855887
TTGTACCTTATGGTCAAACTGATTAAAATT193855869AGATAGATTTGTTTATAGGTTTTATTAAAATTAGCTTTCACATTAATAA
chr1:194456341-194456359
ATGTTCTCGACTTATACGATGGGTTTATCA194456341AGATATAACCTTTTGTAGGTCTAGAGGAATCTGTATACATTCTTTTGTT
chr1:211043001-211043019
TCTTACTGGCAGTTAACTTAATTACATATC211043001AGCTTGATCCTTTTTTAGGCTTTATTAAAACTTTATTAAGTAGACTTTA
chr1:220604414-220604432
TTTCCTCCACTCTCAGCCAAAGACTTTGGG220604414AAATAGATCCTTTAATAGGAAGGGGAGGACATGTGCTCCTAGCATCCCA
chr1:222793993-222794011
TGCTACATAGTACTGGTTACAGTCACTTGA222793993AGATAGACCCTTTTAGTGGTTAGTTCAAGTTAATTGACCTCTTGGGGGT
chr1:223002505-223002523
AACTGCCCTCTAGAGGAAGAAAAAAATCTG223002505AGAAAGATCTTTTAATAGGACATTAAGTATTGTTTTCCCTTGCACCTTT
chr1:236128113-236128131
TTCTATTAAAAGCACATGGAACTTTCTCCA236128113AGATAGATCATATGATAGGCAGCAAAGAGCCTCAATAAATTTAAGAAAA
chr2:82756-82774
AATGGCAGAGCTTTCCAGCCGGAGGGTGTT82756AGAAAGAACCTATTATAGGATTTGACTTGTGCTTGGTAATTTGGGGTGG
chr2:121731-121749
TGGCTTTATTCAACCCTGACAGCAATCCTG121731AGGTAGATTCTTTTATAGTTCCCATTTCACATGTGAGGAAATGAGGCTC
chr2:8213843-8213861
GTTCATAAAGAGCTTTATAATTAAGCAAAC8213843AGAAATATCTTTTTATAGGATGCAGATCTAGGGGTGATAATCACACACA
chr2:10412612-10412630
CCCAGTACCTCAAAATGTGACTATACTTGG10412612AGATAGAACCTTTTAAAAGGTCATGGAAGTAAAATGAGGTCATTTGGAT
chr2:24652601-24652619
AATGAAAAACTGAAGAAATGAAAAGTAATG24652601AGATTGATTCTTTTATATGACTCATGAATTGGCTCAGAAGCCATTGGCT
chr2:32199076-32199094
AATAAAATCAACAAAGAAAAAAGACAATTT32199076AGATAAATCTTTTTATAGGAGTTCATAAGTGTGATAAAAATAAAAAATT
chr2:37000384-37000402
AAGTGTAAAGAAATATGGCATTTGACTAAA37000384AGATAGATACTTTGATAGTTGTGAAATACAAAGGTTATTATTACCTGTA
chr2:37634046-37634064
AAGGCCCATACCAAGTCCAGAAAGATGGGC37634046AGAGAGATATTTTTATAGGGGTTGCATGGCATATTCTAAATCATATGAA
chr2:66809576-66809594
ATCCGAGCGGTCTGGTACCTCAAGGGGTGA66809576AGATAGATCCTTGTAGACGAGTGTGAAGACATGACTGGGAAGATTTAAA
chr2:68789521-68789539
CTGTGAAAAATGTAATTGAAAACCAGCTGG68789521AGAGAGATACTTTTGTAGGTGCTATGAAAGATATTAAAAAGTTTAAGAA
chr2:70139821-70139839
TAACATCCAATTTAAAAATACTCTTTTAAA70139821ACTTAGATCCTTTTATAGTTCATAAACATAGTAATTAGGTGTTCCCATT
chr2:109404034-109404052
AGAGTTCATAAGAAATTTCAGCAATTATCT109404034CGATAAAACCTTTTATAGGAAAATTTTTTCCTAGTGCAGATCCGACCCA
chr2:124227981-124227999
AGGTTTTTTTGTGAGGGTAAGAAAGCTTGA124227981AGATAAATAATTTTATAGGAGAAAGAAGCTTGTATGGCAAATTTTGTCC
chr2:124431991-124432009
AAATTTAATTGCCAATACAACAGTATTGAG124431991AGATAGAGCCTTTAAGAGGCCACTGAGTCATGAGGGCTACTCTCTCATG
chr2:131615329-131615347
AATTTTTTCTTAAAAAGAAAAACAAGATCC131615329AGCTATATCTTTTTATAGGAGGTACTTTATTTTTTAAATTTATTTTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/AGATAGATCCTTTTATAGG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : AGATAGATCCTTTTATAGG | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.612 | 5.602 | search_plus_done; http://172.18.8.78:28018/match?q=AGATAGATCCTTTTATAGG&k=3&no_gap=1&offset=0&limit=50
5.624 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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