GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 14:34:18, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:29078255-29078273
AACAGAGAAACAAGGCACCATCTTTGCCTT29078255AGAAGCAGAGGGTTTTAGGAGGACAGCAAAATGGATAAAATATGGGATA
chr1:31035460-31035478
AAAAGGTGGGCTTTCAGGTCAAAATGAGGC31035460AGGAGAAGAGGGAATTAGGGTAACCAAGAGTTAAGGCAGAAGCAAAAGA
chr1:33912149-33912167
AGAATGTTTGCAGGCAAAAAGAATTATTTT33912149AGTAGAAGAGAGTTTGAAGATGTGGGAAAGAGAGGAGTCAGTACCCCAT
chr1:37117078-37117096
ATTCCCCAGATGGGTAGTGGTGGAAAGGGA37117078AGGAGGAGAGGGCTTTAGGAACAAAGAACAGCAGGTGCAAAGGCCAACC
chr1:41363534-41363552
GATGAGTGAATGCAGATACATCCAAGGTGG41363534CACAGAAGAGGGTTTTAGGTGATACATGGACAAACATTTTGTTATTGTA
chr1:48567340-48567358
CAGGAGAGAACTGCATAGGTACTTTCTTGA48567340AGCAGAAGAGGGCTTCAGGCTGGGAGGCACATACTGCTCACTGTAGACA
chr1:48785923-48785941
CCAAAGCCTAGATAAAGATATTGGTAATCA48785923AGTACAAGAGGGTTATAGCAAACCAAGAAGATTTAACCCAACTAAGACT
chr1:76253510-76253528
TTACCTATACTGAGAGGGCTTGCCAGACAA76253510AGTAGATGAGGGTTTGAGGTACAAAACGGGTTTCTCTTTTTGTAGTTAG
chr1:77336437-77336455
AAATATTGTGTGAAAGTCATTGGAATTCCT77336437AGTAGAAGAAGGTCTTTGGAGATAATTATGAATATCAATGAAATTATCT
chr1:84731578-84731596
TTTCCTCACATTTCTTCAGAAATAGCAAAA84731578ACAAGAAGAGAGTTTTAGGAAAAACACTGAAAACATTGCCAATATGTAG
chr1:85582764-85582782
TATGACTCAGAGGACATATTGAGGAAGTGT85582764GGTAGAGGAGGGTTTTATGAGCATATATTTCTCTACCATCTTTCCCAGG
chr1:102751480-102751498
TACAAACCTAGAGAAAGACTTCAATATACA102751480AGTAGAAGAAGGTTATAGAACATCAAACAGTTTCATCCCAAAGAAGACT
chr1:105580548-105580566
TGGATGACAAGATGGGCTACTGGATTTGGA105580548AGTATAACAAGGTTTTAGGTATGTTTGTTTGTTTTGTTTTATTTCATTT
chr1:108464958-108464976
GAAAAAAAAAATCACTGAGTTTATCCAGGC108464958AGTAGAAGGGATTTTTAGGCATATTTTACCAAAGTTAAAAACTGAAAGT
chr1:118762059-118762077
CAGTTAATGTTTATATTGGTAAAGTCCTTC118762059AGTAGAAGATGGATTTAAGACACAAAATATCAAGTGTTTTTGGTTCTGT
chr1:120822313-120822331
AAAAAAAAAAAGATGAAACCTTAAACCAGA120822313AGTAGAAGAGGGGAGTAGGAAGAACCTGTGCTATCTATTCTCTGGTTTC
chr1:144355372-144355390
TTGCAAGGAATGGGGATCTGGACTCCAGGG144355372AGAAGAATAGAGTTTTAGGAGGAAAGTTCTCCTAAAACTAAATGGAAGG
chr1:147946554-147946572
TTGCAAGGAATGGGGATCTGGACTCCAGGG147946554AGAAGAATAGAGTTTTAGGAGGAAAGTTCTCCTAAAACTAAATGGAAGG
chr1:150222352-150222370
TATAATAGTTATTTCCAAGGGGCTGGGGGC150222352AGGAGAAGTGTGTTTTAGGAAGGAAGTATTATGTAAAAGAAGTAACTCC
chr1:167024130-167024148
TGGGGGTGATATACCCCAAGGGGTGCTGCA167024130AGTAGAAGAGGCTGTGAGGAATTGGGAAGCATATTTCCAGTCTCCCCAG
chr1:168382776-168382794
TTGATAAATCTTGAGATGGTATAGGCTCAA168382776AGTAAAAGTGGGTTTTAGAAAGTATTTAGGCAGGCCGGACATGGTGGCT
chr1:171965353-171965371
TTGCATCATTTGTGAAAAATAGTTTTACTG171965353AGTAGAAGAGGGTTTTTAGCATAATTTCAAGGGGAATGGCTATATAATT
chr1:173298719-173298737
AAAGCAATGCAAAATTAGATATAGTTGTCT173298719ATTAGAGCAGGGTTTTAGGGGATTTTTTTCACCTCATATACAAGTGGAA
chr1:186885020-186885038
TTTTCCTTCTCTAGCTATGCAATATTGTCC186885020AGTAATTGAGGGTTTTAGGACCCAGAAATTATCAGGGTAATTCTTTTGA
chr1:187478657-187478675
AACCCGAATGAAGTATGTATAATGGGAGAT187478657AGTAGAAAAGGGTTATTGGAAATAAAATTCATTTTGAAAAGATTTTCTC
chr1:189431155-189431173
GTATAAATCTAGGTTAAACTTTTTAACCAG189431155AGTAGATGATGGTTTCAGGGCCAACACTAGTCTGTTGTCCTCCTAAGCC
chr1:192120755-192120773
AAATTTGCCTAACATTTTGTGACATAGCTC192120755AGTAGAAGAATGTATTAGGTTGGTGAGAAAGTAATGGCAAAAACCACAA
chr1:192198527-192198545
GATGGCAGATATTGGGTGGCTGGAGGTGGG192198527AGTAGAAAAGGGGTTTAGATTAGTAACTTTATTAGGATGCAAATGCTAT
chr1:200332025-200332043
TCTGTGGATGTTAATTACAGAATAGCTGAC200332025AGCAGAAGAGTATTTTAGGTTAGAATCTTTCTCTGAGTCTCACTGGGCT
chr1:200391842-200391860
AGATGTAAAGAGGATGTTTTCATGGAAGCC200391842AGTAGAAGAGAGTTTCAGTTAGGGAGAAATGATTAGCAGCAAACATAGG
chr1:206121802-206121820
AAAAAAAAAAAGATGAAACCTTAAACCAGA206121802AGTAGAAGAGGGGAGTAGGAAGAACCTGTGCTATCTATTCTCTGGTTTC
chr1:207972524-207972542
ACCAGTGCTGGGGGCCCTCAGACCACAGTG207972524AGTAGTAAAGCGTTTTAGGAACAAGACCACAGAAGAGAGGCTCTCAACT
chr1:209940314-209940332
CAAGAGTGATGATGAGGGAAAAAAGCAGAA209940314AGTAGAAGAGTGTTTAAGGTAAAGGAATTGGAATGATTACAGGCCTATG
chr1:210808313-210808331
GGCTAAGTTATTTTTACAGAGAATACTGCT210808313AGAAGGAGAGGGTTTTGGGGACATAGTGCTTTGATATATGCATTGAGGA
chr1:214789475-214789493
GGAGATTGGCAATCTCATATAGTTCAACCT214789475AGTAGAAGATGCTTTTAGCTTTGTAGTGCTTTTTTGATGATGGTGTTTG
chr1:218774787-218774805
TGTGGAGGCTCTGTCAGAAATGCAGTTAGG218774787AGTGGAAGTAGGTTTTAGGTAGAAGATGGAAGATAGTGTGTTTGGTTTT
chr1:220878954-220878972
GCCCAGGCAGAGGAAGTACAGAAGGGTGGG220878954AGAGGAAGAGGGTTTTAGGCAATGGTAATTACAGATGCAAGACCCTAAA
chr1:224960664-224960682
AGGTCTGTGAGCAAGATTGAAAGGAAAGAA224960664AGGAAAAGAGGGTTTTAAGCCACGTTGTCATGGATTGGAACTGTATCTT
chr1:227506657-227506675
ACCTGTCTGGCGCGTTTGTTAAGGGCGCCC227506657AGAAGCAGAGGGCTTTAGGCTTCCGACAGAGCTGGAGGAGACGGTGCCT
chr1:229339991-229340009
GACAGGGGCCTGTGTGCAGGACAGTATTGC229339991AGGAGAAGCGTGTTTTAGGGCCAGTTGCATGATCTGGAGCAAGTTAGCA
chr1:238094918-238094936
GAATTGCCTGATCTTATCTTGTCCTCTAGA238094918AGTGGAAGAGTGGTTTAGGGTGATTAACTTGTGTGCATGATAGATTAGA
chr1:242270172-242270190
GATCAGTGGTTATGAGGTGGGTAAACATGG242270172AGAAGAAGAGTGTTGTAGGCAGAGGGAATAGCTTGCACCAAGTCTGGGG
chr1:243495376-243495394
CTGAAAGCATTGATGAATGGACAGGTGAAG243495376AGGGGAAGAGGGTTTCAGGCCCAGGAATATAACACACCCAAGACTCTGG
chr2:6456895-6456913
TTGCCATTAAAGGGGGCCAGAGGCAGAAGA6456895ACTAAAAGATGGTTTTAGGTAAAGTGGGAAGGATGTCTTTCTCTGTTTC
chr2:9280439-9280457
ATGGGGTGCTCGAGGCTTCGGGGAACCTGG9280439AGTGGAAGAGAGTTTTAGAAGAAGCAAGCCAGGGCCAGGCACAGCGGCT
chr2:10111589-10111607
TGTCAGGAAGCACTGTTACTTTTAAAATGA10111589AGGAGAAGAGGCTTTTAGTGTCTCGGCAGATTACGAAGCTAACTAGACT
chr2:32321043-32321061
TGGGCAATGGGAAGCCACTAAAGGGTTTTA32321043AGTAGAAGAGTGTTATATGGTAAGGTTTTCCTCTCCAGTAGATCACTCA
chr2:34092747-34092765
CAAGACATTTTTGGGTATACCAGACTAGTT34092747AGCAGAAGAGGGTGTTAGAATGCTGAAGCTGTTTGCTACAACTTCAGCC
chr2:43088343-43088361
GAAAACAGAAATATCACAAGGAGCAAAATT43088343AGGAGAAGTGGGTTGTAGGCACTGAGTGGTGCCAGCCCACCCTACTTCA
chr2:45320464-45320482
CAGGTAGAGGAGGGCATGGAGGGCTTCAGA45320464ACTAGAAGAGAGTTGTAGGTGAAGTGAGCCCAGAAAGAAGCCTTGGACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/AGTAGAAGAGGGTTTTAGG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : AGTAGAAGAGGGTTTTAGG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.423 | 7.413 | search_plus_done; http://172.18.8.78:28018/match?q=AGTAGAAGAGGGTTTTAGG&k=3&no_gap=1&offset=0&limit=50
7.435 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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