GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 20:06:06, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:36705423-36705441
GCATTTGCTTAATTGCTTTGTCACTTCTTT36705423CCACTAATCAACTCATTTTACTTTTTTCGTGGTAAAATATGTATAACAT
chr1:45072618-45072636
ATGTCTAATAGTTCCTCAAGCTAAGTACAT45072618CCAAAACTCAACTCATTTTCTTCCTTACCAAGCTTGCTGCTCCTCCTCC
chr1:45236635-45236653
ATATCACCAAGGACTTTCGGGTTACTAAAT45236635CCAATAATCACCTTTTTTTTTTTCTTTGAGACGGAGTTTTGCTCCTGTC
chr1:55606232-55606250
GCTTCCTTCATATTAACAAAGTACAGTGAC55606232ACAATACTCAACTCATTTTAAAAAAGAAGAATGGAAGAAAGGACTCATT
chr1:56494967-56494985
GGTTCCTTTGAGTAGATACTTCCACCACTC56494967CCAATTTTCAACTTGTTTTATAGATATCTTCTGATTCCACATATCTCCC
chr1:71793058-71793076
TTCTAGGATTTTTCTGTACTTTTTCATGTA71793058CCAATAATTTACTCATTTTCACTGCTATATAGTCTTCCAGCATATAAAT
chr1:71998453-71998471
AGACATTAGAGCAGTACCGCAAGCATGCGG71998453CCCATAATCAACTTGGTTTATTTCTATAATGATGAGAAGGTCTTGTTTA
chr1:74536471-74536489
GGGGCAGGAGGAAGGAGTTAAACTATCTGT74536471CCAACAATCCACTCATTTTGTTTATAAAATGAGGGCATGTAGGAAGAAA
chr1:76117406-76117424
TGTCTCAAAAAAAAAAAAAAAAAAAAAAAT76117406CCAATACTCAACTCTTCTTGGCCAGCCACATTACTGATTATAAAATTAT
chr1:76872754-76872772
TCTCTCTCTCACCTTCTACCTGTGCCCCAG76872754CCAATAATCAAGTCATTTTTTCCTGTAAGGTGGCAAAATGTCGAGATTC
chr1:86334362-86334380
TCTATAAAGGAATACAGTGAAATAATTATG86334362CCAATAATAAACAGGTTTTTGTCACACAAAAACAATGATGTCTAATATT
chr1:87962839-87962857
TCGACTATTAGGTTGAACCACATGAAATTG87962839CCAATATTCAGCTGGTTTTGACCAATAAAGATGGTGATTTCATATAATT
chr1:92038441-92038459
GAACTAGTTCCTACTGGATGTGAAAATAAG92038441CATATAATCAACTCTTTTTAACTTTTATTTTAATTTCATGGGTATATGT
chr1:95075662-95075680
ATATTTAGGAAATATTTAAATGGCAACTCA95075662GCAATGATCAACTCGATTTACTTCTGTTTCTTTATTTTAAAAAATAGGA
chr1:102218737-102218755
TCTTGTTGGAGTCTATATACTTAAGTTAGT102218737CCAAACCTCAACTCGTTTTATTTTTAAAAATCTATTGTGGGGTGATCTA
chr1:104912651-104912669
TCCCTGAAACCCCATTAATGATTTCTATGA104912651CCAATATTTAATTCGTTTTTATACTTAATAATATTTTGTATTTATTGAT
chr1:110949880-110949898
GCTCGACACTGCACAACTGGCACAATCTTC110949880CCAAAAGTCAACCCGTTTTCTAAAACTTCCGCAGAACCACCCTGACCGT
chr1:121181720-121181738
GAATAGAGAACCCAGAAACAAATCCACACA121181720CCTATAGTGAACTCGTTTTTGACAAAGGTGCCAAGAATATAAATTGAGG
chr1:146367465-146367483
CAGACTATTAGGTTGAACCACATGAAATTG146367465CCAATATTCAGCTGGTTTTGACCAATAAAGGTGGTGATTTCATATAATT
chr1:162900089-162900107
ACAAGTATTTCAAGATATCCTTTTTTTGAA162900089CCAATAATCAATTTGATTTACAACTTTGGGAAGGCATTTTAATTGTGGC
chr1:176669236-176669254
TCCCCTTCTCTCATTTTCCCCCCTCACACC176669236CCAATAACCAACTCTCTTTTATCTTTCTCTTCCAGCTCTCCTCTTCCTG
chr1:188181634-188181652
TATTTCTTCTGTCAGACTGTATATTTGTAC188181634CCATTAATCAACTTCTTTTCAGTCCCTCCTCTCTATTATCATTCTCGAC
chr1:192498128-192498146
AAAGTCAATAGAGGATTTTGAGCAAAGGAA192498128CGAATAATCAACACTTTTTTTTAAAGAATCACTCTGGTAGCTGTGTTTA
chr1:199024990-199025008
TCTATAGTTGTATTGTGCAAAATGCTTACA199024990CAAATAATTAACTCCTTTTTTAAAGGATGAAAATTAGGAATTTAAATGC
chr1:202318427-202318445
CTAATCGGTTTCATTCTTGGCCAGCTTCCT202318427CCACTAATCAAGTCTTTTTCTGACCCCAGGGTCTTAGGAATAGCGTCAC
chr1:212134759-212134777
GAAACCCTACAAGCCAGAAGAGACTGTGGG212134759CCAATATTCAATTCTTTTTTTTTTTTTTCCTGAGATGGAGTCTTGGTCT
chr1:231060067-231060085
GCTTCATGTAAATAGGTGATTGAAAATGTG231060067ACAACAATCAATTCGTTTTTTTTGTTTTTTGAGATGGAGTCTCGCTGTG
chr1:240743702-240743720
TTTGAATTTTCATAAGCTTTTCTCTTCATA240743702CCAATAATCAACTAATATTTTCATTTGCTGACATGCCTTATCAAGATAT
chr1:241676566-241676584
TAGTAAAATTACATTCTCAATATGCATTAT241676566CAAATAATCAACTGGTTTTAAAAAGATTTATATATAAAATAAAAAATCA
chr1:243721919-243721937
CTCAATAGCAACCACAGCTAGATATATTTC243721919CCAACAATCAAGTCATTTTTTGCAATCTTTGTTAGTTCTAACTTGATTA
chr2:5603317-5603335
ATATTTCATTGAAAGTCTCAATCCCCGTCA5603317CCAATAATCAAGTAGTTATTGTGTCTAGAGCTTGGACAAATAAATTGCC
chr2:22517423-22517441
TTTGAAACAGCTTTGAGGCACCCAAATGCA22517423CCAATAGTCAACTAGTTTGAAGTATATGATTTTAGCCTAGTGGAGAAGC
chr2:33737806-33737824
TGACAAGTTTCATGATATTCATTTCCTCAC33737806CCATTAATCCACTCGTTTATTAATTTAGTGAATAATTTTTGAGTATCTT
chr2:38558832-38558850
GAACTGAGAGTCAAGAAATAAATTCATATA38558832TCTATAATCAACTGGTTTTCAATAAGGTATCAAGAGCATTCAATAGTGG
chr2:39433941-39433959
CTGTCATGAATTAAGTGTCCATTAAGTGTC39433941ACAATAATCAACTCCTTCTGCCTCCTTTTCTACTATGCTGTCAGGCCCT
chr2:45710813-45710831
AGCAATATTAGATATCTGTATTTTTAAAGT45710813CCAATATTCATCTCATTTTATCCTTCTCCTTGACATCAGACAGGAACAG
chr2:48188623-48188641
GAATAGAGAACCCTGAAATAAATCCATGCA48188623CCTATAATGAACTCATTTTCATCAAAGTTGCCAAGAACTTACACTGGGG
chr2:51435451-51435469
AGTATTCTTGCCCCTAAAATCAAATAGGAA51435451CCATTAATCAACTGTTTTTATTATTTTGATATTCAACAGTTTTAGAAAG
chr2:77683046-77683064
CTTTTATGGCTTCTCTCCAAAACCCCTTTG77683046CCAGTAATCCACTGGTTTTTATCCATTTTTCCTTATTCATTACCTGTTT
chr2:80566351-80566369
TGTGTGTGTATCACACCCATCCATTGAGTT80566351TCAATAATCAACTCTCTTTTGCAAGGAATAAAATATGTTATAGCCAGAT
chr2:87437434-87437452
TTTGCTAGAGGTTTATTTTATTAATCTTTT87437434AAAATAATCAACTCGTTGTTTCATTGATTCTCTACTGTGTTTCTGGTTT
chr2:102256215-102256233
TCCACCTCTATTTGATGGGCTATTTTTACT102256215GCAATAATCAACTTTTTTTTTGAGACGGAGTTTCGCTCTTGTCACCCAG
chr2:110413406-110413424
GCTTGTGGGAAAGCCCAGGTGTACTGAAAC110413406AAAATAAGCAACTCGTTTTCAGAGTCAGACATCTTAGGGTTCAAATTCT
chr2:112592901-112592919
TGTATAAGATGCCGGGGCTAGTAATATAAT112592901CTAATAATCAACTGATTTTTATATTCAGACTGATTGGACTACATTTTCC
chr2:117550407-117550425
AGAGGTAGAGAAAAAAAATAAACATATCGC117550407CCAAAAAACAACTCTTTTTAGAGTCCTAGGGAGGCTGTCAGTTTCACAA
chr2:119351145-119351163
AGTCTCTTGCAAAGTCTCAGTGTCCACATC119351145CCAATGATCAACTATTTTTTTTTCTTTAATCCCATTTACATTTAACTAA
chr2:126096835-126096853
AACACGTATATGTAAAGGTGCTCGGTGTCA126096835CCAATCATCAACTCCTCTTCCTTACCTTTCCCTAATTCCTGTTTTCCCA
chr2:146473107-146473125
TAACTTTGGGAATTGTCCCGACATTGACAC146473107TCAATAATAAACTCATTTTGTTGAAATGATTACAGTGCATTTTGGAAAA
chr2:147772286-147772304
CTTAGAATTCCAGCTTACATGCCATCTTCA147772286CCAAAAATCAACACATTTTTTGAGAAGTGACAAGACAAAGGAAAAGGAC
chr2:171809089-171809107
GCATTGTCTATTACCACTTAATTACTTTGA171809089CCAATAAGCACCTTGTTTTCAAATGTAGCTACCTCTGAAAGGCCATAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CCAATAATCAACTCGTTTT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CCAATAATCAACTCGTTTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.202 | 5.192 | search_plus_done; http://172.18.8.78:28018/match?q=CCAATAATCAACTCGTTTT&k=3&no_gap=1&offset=0&limit=50
5.214 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).