GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 09:20:04, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:10851935-10851953
CTTCAGAAAGACAATAAACCTGCCCGGTCG10851935CCATGGATATGACATATTTGCTCTGAAAACAACACAATAATTAGCAAAG
chr1:14294462-14294480
GCCTCTTTGCAGCTGCAGTGGGGACAGAAA14294462CCATGGAAACCACAGATTGGGCAGTGCCTCTCCCTTGGTCTCTAGGGGC
chr1:24455619-24455637
CTCTCACCTTTTTGACCCAGAACTCCTCTC24455619CCATGGCTGCCACATGTTATCCTGTCTGGCTCTCCTCCTACCTCTCTGA
chr1:35066028-35066046
AGCCACAATTGCTGTTGCCACTGGGCACTA35066028CCATGGTTACCACAAATGAATTCCCAACCATTGGTGGGGGTTTTTGCAT
chr1:58294170-58294188
TTTTCTTTGTGTTCTGGCTTTTCCCCTGTT58294170CCAGTGATACCACATATTATGTGCTCAACAAAAGCCTGTTGATTGAAAT
chr1:58530039-58530057
ACCTTCCTCAGACTGCTGGGCTGGGAGTCA58530039CCATGGAGACCACGTTTTAGCATCCTAATGACACTGAAATTCAGTTCAA
chr1:59162038-59162056
GTAGCTACTTCTGGATCTCTACCTGAATCT59162038CCATAGGTACCACATATTAGCATGTTTAAAGCTTGAAATCACCTTTCCT
chr1:64524141-64524159
ACCATTGAATATGATGTTAGCTGCGTTTTT64524141CCATAGATGCCACTTATTAGATTGAGAAAATTCCCTATTATTCCTATTT
chr1:90493360-90493378
TAGCTTAAAATATGAATTAACACCCATGTT90493360GCATGCATTCCACATATTAAAATTTGTTTTATATAATTTCTAAATGTTT
chr1:93240671-93240689
CAGTCATGCACCGCATAAGAACATTTCAGT93240671CAATGGATACCACATATAAGAGGGTAGTCCCTGCCTGAGCATAGTGGCT
chr1:102639105-102639123
ATCTTATTTATTCTGAAGACTTTAATAATC102639105TCATGGATACCACATATGTGGACATATTTCAGAGACATGGTGTGTCATA
chr1:105576324-105576342
AATTTAATAACTTCTGCAATATTCTTTTCG105576324CCATGGAAATCACATATTCATAGGTCCTACAGATGAGAGTATAGACATA
chr1:108058185-108058203
CAGTTAAGTCCTCAATCTCAGCCCCTGAAG108058185CCATGGCTGCCACAAATTATTTGTTATTAAAAAAAAAAAGTTTACCTTT
chr1:151021487-151021505
ATAACATGCATTGGTTATTCACATTGTTAG151021487CCATTGATTCCACCTATTATTTATTGAGCAACTACTGGTTGGTCATTAG
chr1:155981917-155981935
ACCTAGGAGCCAGAAGACCTGAGAAATACC155981917CCATGGAGAACATATATTAAACAAGGTAGGCCAGGCATGCAACTGAAAT
chr1:163094707-163094725
AGCCCTATAATTTCCATCTGGAGGATTAGG163094707CCATGGATATCACCTATTCCTATTCTCTGTGGATGACAAGAGCACAAAA
chr1:164424871-164424889
AATCAAAGATGCCATAGATTGGAAAGAAAA164424871CCATGGAAAAGACATATTATGCAAATGGCAACCACAAGAAAGCTGGAGT
chr1:173107781-173107799
GCTTGTAACACAAAGGATAAATGCTTGAGG173107781GCATGGATACCCCATTTTACATGATGTGATTATTACTCATCGCATGCCT
chr1:194063155-194063173
CTATGCTGGAAAATAAGAGGTGTGATGAGG194063155GCATGGATTCCACTTATTAATAAATACTCTTATGAGAAAACATTTTTTC
chr1:202763914-202763932
CATTCCAAGACCCCCAGTGGATGCCTGAAA202763914CCATGGATAGCAAATACTAAACCCTATATATACTATGTTTTTTTCCTAT
chr1:204195044-204195062
TTCGCGCCACACGTACAAACTCAAAAAATG204195044CCATGACTTCCACATATTACATACCTGAGTCTGCACGCACCGGGTGGAT
chr1:239155488-239155506
ATTCCTTTTTATTTCACTCAGGGAGTGCTC239155488CTATGAATACCACATATTTTGAAAAGTGGGATTTAGGGAAGAGCGGGTG
chr2:5734787-5734805
AGAATGCTGCTACAGAAATAGGCCTGTCTT5734787CCATGCATGCCACATAATATTTCAGTCACGAGAATTCTCAGCCAAAAAT
chr2:7215189-7215207
CTACTAACCTTCCCAAAACTTTTTTTATAC7215189CCATGGATTCTACAGATTAGAAGTTGGGCAAGGCACAGTGTGGATGGTG
chr2:17446824-17446842
ATATGGTTTCGGAGTTGTTAACCCATAGCC17446824CCATGGAAACAACTTATTATCTACAGTATGGTGATTTCTTCCTTTTGCC
chr2:23719114-23719132
TTTGGTTTTGCATCCTTAGACACGAGACAG23719114CCCTGGATACCACTTATAATTTTTTATGTAATATGGTATTTTCAGAATA
chr2:27277500-27277518
TCCTGGCTTAATTTTTTTTTCCCTGTAGCC27277500CCCTGGATACCATCTATTACCATCGGGAGCTCCTTTGCTATTCTCTGGA
chr2:32506113-32506131
AAATCCGACAGAATAATGTAAGTAGATAAC32506113CCATTGATTCCACATACTAAGAAACCTGAAATAAGTAAAAATCCATGAA
chr2:36548502-36548520
ACTGCTGCATAACAAAATATAGTGCCCAGT36548502GCATGGAAAACACATATTACCCTTCCTTTTTGTGCACTTTATCAACAAT
chr2:50778669-50778687
CCAGGTCTTCAACAGGGCCCTTCTGAAAGA50778669CCATGGTTATCACAGATTACTGAGTCTAAAAGAAGCACTCAGCTTAGTT
chr2:72705906-72705924
AAAATTGAGACTGGTTGAGAGAAAGAGTAT72705906CAGTGGATACCACATATTCTTCTTTTGATAGACAAATGAACCTCACGTT
chr2:76916726-76916744
TTCATTACACATATTTTATTGCAAGCTGAG76916726CCATGAAGACCACATTTTATTACAACTGAAGCAGAAAATATAATTAATT
chr2:107813539-107813557
GACTTTAGTGGAAAGGCGTTTAGTGTTTCT107813539CCATGAATAACATATATTAGCTTTTGAGATGAAATAGATACATTTCACT
chr2:109452829-109452847
CCTTTCTAAGGTGGAACAATATTTGTTTAT109452829GCATGAATACCACATATTGCTTATCCATTCATTGATAGATATTTGGGCA
chr2:127942716-127942734
ACGCCCAGCCCCCATGGAGTTTTGACATCT127942716CCCTGTATACCACATATTTCCTATAAACCAGTAGCGAACCTAGAAACTT
chr2:132624604-132624622
ATCTTGTAATAGAGATATACAAAATATCTG132624604CCTTGGATACCACTTATAAAAAGCAAGGAACTGAATGGCTGTGTAGATG
chr2:154511367-154511385
TAGGGAGCAGGTGATCTTGGAGCCAATTCT154511367CCATGGATACCAAAGAATAACTCTGTATCTATGTGGCACCTGAATCCTT
chr2:167652125-167652143
ATCTAGTAGTATCTAAAGTAGTAGTAGTAT167652125CTATGGATACTAGATATTAATGCAAATGTATTTACCCAAGTATCTCATT
chr2:168239274-168239292
AGGTGGGCGGAGCAGGTCATGTCTGAATTT168239274TCATGGATGCCAAATATTACTCTAAATAAATCACCAGGGAGAATTTTAC
chr2:172442273-172442291
TGAGAGGAATAATCTTCTCACATGTTAAAG172442273CCATGGATACCATTTCTTACATGCTTGAGTGGATTTCCACCCAATGTCA
chr2:172870734-172870752
CCAAAGTGCTGGGATTACAGGCATAAGCTA172870734CCATGTATAACACATTTTATTTATCTACTCATTGGTTGATGTGAAACAG
chr2:184445472-184445490
TTCATTTACCATAATGTTTCTGTGGCTTAT184445472CTATGTGTACCACATATTAATATTTCATTTATTTTTATTGCTAAATAGT
chr2:186702648-186702666
CAACTCCAGGAAAAGAGGAATATCTGATTT186702648CCATAGTTACCACATAGTATTATTATGCCCAATTTTGAAAAACAACTAC
chr2:191385850-191385868
GAACTTAAGAGAGGGACATGAAAGTTGCAG191385850TCATTCATACCACATATTACTATTCATTCATTCTTCCACCCTCTGCAAC
chr2:203996972-203996990
AATATCTGTTATTTGATTCAGCAGGGCCTT203996972CCTTGGATACCATATCTTACGTAGTTTTGTTGTTTTTGTCTCCCCGGGG
chr2:214933174-214933192
AACCCTAATTTGCCCAAGTTTTATCAGTAA214933174CCATGGTTCCCACATAGTACTCATGGAGGTGGCCATGGTTTTTATTTTC
chr2:222262152-222262170
TCATCTTGGGTGGAGTTTATGTCTCTAATC222262152CCTTGAATACTACATATTACTCAGTGTAAACAATAGATTCAAAATAATG
chr3:21169691-21169709
ACATAATAAAAAATGATAAAGGGGATATCA21169691CCATGGATCCCACAGAATACAAACTACCATCAGAGAATACTATAAACAC
chr3:22955470-22955488
TAGATTTTTGTCCAGTTGAAAACATAACCC22955470CCATGGTTACCACTTATTATCTCATAGAACATTACCTGGTTTTGTATTT
chr3:27853192-27853210
ATTTTGCTAATTGTATGAGTTAATGAAGAG27853192CTATGGATATCAGATATTAAACAAATCTGTTAAGGAATTGAACAGAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CCATGGATACCACATATTA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CCATGGATACCACATATTA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.655 | 5.645 | search_plus_done; http://172.18.8.78:28018/match?q=CCATGGATACCACATATTA&k=3&no_gap=1&offset=0&limit=50
5.668 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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